Data-Limited Tissue Segmentation using Inpainting-Based Self-Supervised Learning

Although supervised learning has enabled high performance for image segmentation, it requires a large amount of labeled training data, which can be difficult to obtain in the medical imaging field. Self-supervised learning (SSL) methods involving pretext tasks have shown promise in overcoming this requirement by first pretraining models using unlabeled data. In this work, we evaluate the efficacy of two SSL methods (inpainting-based pretext tasks of context prediction and context restoration) for CT and MRI image segmentation in label-limited scenarios, and investigate the effect of implementation design choices for SSL on downstream segmentation performance. We demonstrate that optimally trained and easy-to-implement inpainting-based SSL segmentation models can outperform classically supervised methods for MRI and CT tissue segmentation in label-limited scenarios, for both clinically-relevant metrics and the traditional Dice score.

Scale-Equivariant Unrolled Neural Networks for Data-Efficient Accelerated MRI Reconstruction

Unrolled neural networks have enabled state-of-the-art reconstruction performance and fast inference times for the accelerated magnetic resonance imaging (MRI) reconstruction task. However, these approaches depend on fully-sampled scans as ground truth data which is either costly or not possible to acquire in many clinical medical imaging applications; hence, reducing dependence on data is desirable. In this work, we propose modeling the proximal operators of unrolled neural networks with scale-equivariant convolutional neural networks in order to improve the data-efficiency and robustness to drifts in scale of the images that might stem from the variability of patient anatomies or change in field-of-view across different MRI scanners. Our approach demonstrates strong improvements over the state-of-the-art unrolled neural networks under the same memory constraints both with and without data augmentations on both in-distribution and out-of-distribution scaled images without significantly increasing the train or inference time.

Data-Efficient Information Extraction from Form-Like Documents

Automating information extraction from form-like documents at scale is a pressing need due to its potential impact on automating business workflows across many industries like financial services, insurance, and healthcare. The key challenge is that form-like documents in these business workflows can be laid out in virtually infinitely many ways; hence, a good solution to this problem should generalize to documents with unseen layouts and languages. A solution to this problem requires a holistic understanding of both the textual segments and the visual cues within a document, which is non-trivial. While the natural language processing and computer vision communities are starting to tackle this problem, there has not been much focus on (1) data-efficiency, and (2) ability to generalize across different document types and languages. In this paper, we show that when we have only a small number of labeled documents for training (~50), a straightforward transfer learning approach from a considerably structurally-different larger labeled corpus yields up to a 27 F1 point improvement over simply training on the small corpus in the target domain. We improve on this with a simple multi-domain transfer learning approach, that is currently in production use, and show that this yields up to a further 8 F1 point improvement. We make the case that data efficiency is critical to enable information extraction systems to scale to handle hundreds of different document-types, and learning good representations is critical to accomplishing this.

VORTEX: Physics-Driven Data Augmentations for Consistency Training for Robust Accelerated MRI Reconstruction

Deep neural networks have enabled improved image quality and fast inference times for various inverse problems, including accelerated magnetic resonance imaging (MRI) reconstruction. However, such models require large amounts of fully-sampled ground truth data, which are difficult to curate and are sensitive to distribution drifts. In this work, we propose applying physics-driven data augmentations for consistency training that leverage our domain knowledge of the forward MRI data acquisition process and MRI physics for improved data efficiency and robustness to clinically-relevant distribution drifts. Our approach, termed VORTEX (1) demonstrates strong improvements over supervised baselines with and without augmentation in robustness to signal-to-noise ratio change and motion corruption in data-limited regimes; (2) considerably outperforms state-of-the-art data augmentation techniques that are purely image-based on both in-distribution and out-of-distribution data; and (3) enables composing heterogeneous image-based and physics-driven augmentations.

Supervised Contrastive Learning for Pre-trained Language Model Fine-tuning

State-of-the-art natural language understanding classification models follow two-stages: pre-training a large language model on an auxiliary task, and then fine-tuning the model on a task-specific labeled dataset using cross-entropy loss. Cross-entropy loss has several shortcomings that can lead to sub-optimal generalization and instability. Driven by the intuition that good generalization requires capturing the similarity between examples in one class and contrasting them with examples in other classes, we propose a supervised contrastive learning (SCL) objective for the fine-tuning stage. Combined with cross-entropy, the SCL loss we propose obtains improvements over a strong RoBERTa-Large baseline on multiple datasets of the GLUE benchmark in both the high-data and low-data regimes, and it does not require any specialized architecture, data augmentation of any kind, memory banks, or additional unsupervised data. We also demonstrate that the new objective leads to models that are more robust to different levels of noise in the training data, and can generalize better to related tasks with limited labeled task data.

Self-training Improves Pre-training for Natural Language Understanding

Unsupervised pre-training has led to much recent progress in natural language understanding. In this paper, we study self-training as another way to leverage unlabeled data through semi-supervised learning. To obtain additional data for a specific task, we introduce SentAugment, a data augmentation method which computes task-specific query embeddings from labeled data to retrieve sentences from a bank of billions of unlabeled sentences crawled from the web. Unlike previous semi-supervised methods, our approach does not require in-domain unlabeled data and is therefore more generally applicable. Experiments show that self-training is complementary to strong RoBERTa baselines on a variety of tasks. Our augmentation approach leads to scalable and effective self-training with improvements of up to 2.6% on standard text classification benchmarks. Finally, we also show strong gains on knowledge-distillation and few-shot learning.

Mind The Facts: Knowledge-Boosted Coherent Abstractive Text Summarization

Neural models have become successful at producing abstractive summaries that are human-readable and fluent. However, these models have two critical shortcomings: they often don't respect the facts that are either included in the source article or are known to humans as commonsense knowledge, and they don't produce coherent summaries when the source article is long. In this work, we propose a novel architecture that extends Transformer encoder-decoder architecture in order to improve on these shortcomings. First, we incorporate entity-level knowledge from the Wikidata knowledge graph into the encoder-decoder architecture. Injecting structural world knowledge from Wikidata helps our abstractive summarization model to be more fact-aware. Second, we utilize the ideas used in Transformer-XL language model in our proposed encoder-decoder architecture. This helps our model with producing coherent summaries even when the source article is long. We test our model on CNN/Daily Mail summarization dataset and show improvements on ROUGE scores over the baseline Transformer model. We also include model predictions for which our model accurately conveys the facts, while the baseline Transformer model doesn't.