Deep learning-based computer vision to recognize and classify suturing gestures in robot-assisted surgery

Our previous work classified a taxonomy of suturing gestures during a vesicourethral anastomosis of robotic radical prostatectomy in association with tissue tears and patient outcomes. Herein, we train deep-learning based computer vision (CV) to automate the identification and classification of suturing gestures for needle driving attempts. Using two independent raters, we manually annotated live suturing video clips to label timepoints and gestures. Identification (2395 videos) and classification (511 videos) datasets were compiled to train CV models to produce two- and five-class label predictions, respectively. Networks were trained on inputs of raw RGB pixels as well as optical flow for each frame. Each model was trained on 80/20 train/test splits. In this study, all models were able to reliably predict either the presence of a gesture (identification, AUC: 0.88) as well as the type of gesture (classification, AUC: 0.87) at significantly above chance levels. For both gesture identification and classification datasets, we observed no effect of recurrent classification model choice (LSTM vs. convLSTM) on performance. Our results demonstrate CV's ability to recognize features that not only can identify the action of suturing but also distinguish between different classifications of suturing gestures. This demonstrates the potential to utilize deep learning CV towards future automation of surgical skill assessment.

Active Learning under Label Shift

Distribution shift poses a challenge for active data collection in the real world. We address the problem of active learning under label shift and propose ALLS, the first framework for active learning under label shift. ALLS builds on label shift estimation techniques to correct for label shift with a balance of importance weighting and class-balanced sampling. We show a bias-variance trade-off between these two techniques and prove error and sample complexity bounds for a disagreement-based algorithm under ALLS. Experiments across a range of label shift settings demonstrate ALLS consistently improves performance, often reducing sample complexity by more than half an order of magnitude. Ablation studies corroborate the bias-variance trade-off revealed by our theory

OrbNet: Deep Learning for Quantum Chemistry Using Symmetry-Adapted Atomic-Orbital Features

We introduce a machine learning method in which energy solutions from the Schrodinger equation are predicted using symmetry adapted atomic orbitals features and a graph neural-network architecture. \textsc{OrbNet} is shown to outperform existing methods in terms of learning efficiency and transferability for the prediction of density functional theory results while employing low-cost features that are obtained from semi-empirical electronic structure calculations. For applications to datasets of drug-like molecules, including QM7b-T, QM9, GDB-13-T, DrugBank, and the conformer benchmark dataset of Folmsbee and Hutchison, \textsc{OrbNet} predicts energies within chemical accuracy of DFT at a computational cost that is thousand-fold or more reduced.

Causal Discovery in Physical Systems from Videos

Causal discovery is at the core of human cognition. It enables us to reason about the environment and make counterfactual predictions about unseen scenarios, that can vastly differ from our previous experiences. We consider the task of causal discovery from videos in an end-to-end fashion without supervision on the ground-truth graph structure. In particular, our goal is to discover the structural dependencies among environmental and object variables: inferring the type and strength of interactions that have a causal effect on the behavior of the dynamical system. Our model consists of (a) a perception module that extracts a semantically meaningful and temporally consistent keypoint representation from images, (b) an inference module for determining the graph distribution induced by the detected keypoints, and (c) a dynamics module that can predict the future by conditioning on the inferred graph. We assume access to different configurations and environmental conditions, i.e., data from unknown interventions on the underlying system; thus, we can hope to discover the correct underlying causal graph without explicit interventions. We evaluate our method in a planar multi-body interaction environment and scenarios involving fabrics of different shapes like shirts and pants. Experiments demonstrate that our model can correctly identify the interactions from a short sequence of images and make long-term future predictions. The causal structure assumed by the model also allows it to make counterfactual predictions and extrapolate to systems of unseen interaction graphs or graphs of various sizes.

Convolutional Tensor-Train LSTM for Spatio-temporal Learning

Higher-order Recurrent Neural Networks (RNNs) are effective for long-term forecasting since such architectures can model higher-order correlations and long-term dynamics more effectively. However, higher-order models are expensive and require exponentially more parameters and operations compared with their first-order counterparts. This problem is particularly pronounced in multidimensional data such as videos. To address this issue, we propose Convolutional Tensor-Train Decomposition (CTTD), a novel tensor decomposition with convolutional operations. With CTTD, we construct Convolutional Tensor-Train LSTM (Conv-TT-LSTM) to capture higher-order space-time correlations in videos. We demonstrate that the proposed model outperforms the conventional (first-order) Convolutional LSTM (ConvLSTM) as well as the state-of-the-art ConvLSTM-based approaches in pixel-level video prediction tasks on Moving-MNIST and KTH action datasets, but with much fewer parameters.

Learning Pose Estimation for UAV Autonomous Navigation andLanding Using Visual-Inertial Sensor Data

In this work, we propose a robust network-in-the-loop control system that allows an Unmanned-Aerial-Vehicles to navigate and land autonomously ona desired target. To estimate the global pose of theaerial vehicle, we develop a deep neural network ar-chitecture for visual-inertial odometry, which providesa robust alternative to traditional techniques for au-tonomous navigation of Unmanned-Aerial-Vehicles. Wefirst provide experimental results on the accuracy ofthe estimation by comparing the prediction of our modelto traditional visual-inertial approaches on the publiclyavailable EuRoC MAV dataset. The results indicate aclear improvement in the accuracy of the pose estima-tion up to 25% against the baseline. Second, we useAirsim, a simulator available as a plugin for UnrealEngine, to create new datasets of photorealistic imagesand inertial measurement to train and test our model.We finally integrate the proposed architecture for globallocalization with the Airsim closed-loop control system,and we provide simulation results for the autonomouslanding of the aerial vehicle.

Memory Augmented Recursive Neural Networks

Recursive neural networks have shown an impressive performance for modeling compositional data compared to their recurrent counterparts. Although recursive neural networks are better at capturing long range dependencies, their generalization performance starts to decay as the test data becomes more compositional and potentially deeper than the training data. In this paper, we present memory-augmented recursive neural networks to address this generalization performance loss on deeper data points. We augment Tree-LSTMs with an external memory, namely neural stacks. We define soft push and pop operations for filling and emptying the memory to ensure that the networks remain end-to-end differentiable. In order to assess the effectiveness of the external memory, we evaluate our model on a neural programming task introduced in the literature called equation verification. Our results indicate that augmenting recursive neural networks with external memory consistently improves the generalization performance on deeper data points compared to the state-of-the-art Tree-LSTM by up to 10%.