Extracting ORR Catalyst Information for Fuel Cell from Scientific Literature

The oxygen reduction reaction (ORR) catalyst plays a critical role in enhancing fuel cell efficiency, making it a key focus in material science research. However, extracting structured information about ORR catalysts from vast scientific literature remains a significant challenge due to the complexity and diversity of textual data. In this study, we propose a named entity recognition (NER) and relation extraction (RE) approach using DyGIE++ with multiple pre-trained BERT variants, including MatSciBERT and PubMedBERT, to extract ORR catalyst-related information from the scientific literature, which is compiled into a fuel cell corpus for materials informatics (FC-CoMIcs). A comprehensive dataset was constructed manually by identifying 12 critical entities and two relationship types between pairs of the entities. Our methodology involves data annotation, integration, and fine-tuning of transformer-based models to enhance information extraction accuracy. We assess the impact of different BERT variants on extraction performance and investigate the effects of annotation consistency. Experimental evaluations demonstrate that the fine-tuned PubMedBERT model achieves the highest NER F1-score of 82.19% and the MatSciBERT model attains the best RE F1-score of 66.10%. Furthermore, the comparison with human annotators highlights the reliability of fine-tuned models for ORR catalyst extraction, demonstrating their potential for scalable and automated literature analysis. The results indicate that domain-specific BERT models outperform general scientific models like BlueBERT for ORR catalyst extraction.

SynthEHR-Eviction: Enhancing Eviction SDoH Detection with LLM-Augmented Synthetic EHR Data

Eviction is a significant yet understudied social determinants of health (SDoH), linked to housing instability, unemployment, and mental health. While eviction appears in unstructured electronic health records (EHRs), it is rarely coded in structured fields, limiting downstream applications. We introduce SynthEHR-Eviction, a scalable pipeline combining LLMs, human-in-the-loop annotation, and automated prompt optimization (APO) to extract eviction statuses from clinical notes. Using this pipeline, we created the largest public eviction-related SDoH dataset to date, comprising 14 fine-grained categories. Fine-tuned LLMs (e.g., Qwen2.5, LLaMA3) trained on SynthEHR-Eviction achieved Macro-F1 scores of 88.8% (eviction) and 90.3% (other SDoH) on human validated data, outperforming GPT-4o-APO (87.8%, 87.3%), GPT-4o-mini-APO (69.1%, 78.1%), and BioBERT (60.7%, 68.3%), while enabling cost-effective deployment across various model sizes. The pipeline reduces annotation effort by over 80%, accelerates dataset creation, enables scalable eviction detection, and generalizes to other information extraction tasks.

"So, Tell Me About Your Policy...": Distillation of interpretable policies from Deep Reinforcement Learning agents

Recent advances in Reinforcement Learning (RL) largely benefit from the inclusion of Deep Neural Networks, boosting the number of novel approaches proposed in the field of Deep Reinforcement Learning (DRL). These techniques demonstrate the ability to tackle complex games such as Atari, Go, and other real-world applications, including financial trading. Nevertheless, a significant challenge emerges from the lack of interpretability, particularly when attempting to comprehend the underlying patterns learned, the relative importance of the state features, and how they are integrated to generate the policy's output. For this reason, in mission-critical and real-world settings, it is often preferred to deploy a simpler and more interpretable algorithm, although at the cost of performance. In this paper, we propose a novel algorithm, supported by theoretical guarantees, that can extract an interpretable policy (e.g., a linear policy) without disregarding the peculiarities of expert behavior. This result is obtained by considering the advantage function, which includes information about why an action is superior to the others. In contrast to previous works, our approach enables the training of an interpretable policy using previously collected experience. The proposed algorithm is empirically evaluated on classic control environments and on a financial trading scenario, demonstrating its ability to extract meaningful information from complex expert policies.

Large Language Model for Extracting Complex Contract Information in Industrial Scenes

This paper proposes a high-quality dataset construction method for complex contract information extraction tasks in industrial scenarios and fine-tunes a large language model based on this dataset. Firstly, cluster analysis is performed on industrial contract texts, and GPT-4 and GPT-3.5 are used to extract key information from the original contract data, obtaining high-quality data annotations. Secondly, data augmentation is achieved by constructing new texts, and GPT-3.5 generates unstructured contract texts from randomly combined keywords, improving model robustness. Finally, the large language model is fine-tuned based on the high-quality dataset. Experimental results show that the model achieves excellent overall performance while ensuring high field recall and precision and considering parsing efficiency. LoRA, data balancing, and data augmentation effectively enhance model accuracy and robustness. The proposed method provides a novel and efficient solution for industrial contract information extraction tasks.

Enhancing Vaccine Safety Surveillance: Extracting Vaccine Mentions from Emergency Department Triage Notes Using Fine-Tuned Large Language Models

This study evaluates fine-tuned Llama 3.2 models for extracting vaccine-related information from emergency department triage notes to support near real-time vaccine safety surveillance. Prompt engineering was used to initially create a labeled dataset, which was then confirmed by human annotators. The performance of prompt-engineered models, fine-tuned models, and a rule-based approach was compared. The fine-tuned Llama 3 billion parameter model outperformed other models in its accuracy of extracting vaccine names. Model quantization enabled efficient deployment in resource-constrained environments. Findings demonstrate the potential of large language models in automating data extraction from emergency department notes, supporting efficient vaccine safety surveillance and early detection of emerging adverse events following immunization issues.

Thermodynamic Prediction Enabled by Automatic Dataset Building and Machine Learning

New discoveries in chemistry and materials science, with increasingly expanding volume of requisite knowledge and experimental workload, provide unique opportunities for machine learning (ML) to take critical roles in accelerating research efficiency. Here, we demonstrate (1) the use of large language models (LLMs) for automated literature reviews, and (2) the training of an ML model to predict chemical knowledge (thermodynamic parameters). Our LLM-based literature review tool (LMExt) successfully extracted chemical information and beyond into a machine-readable structure, including stability constants for metal cation-ligand interactions, thermodynamic properties, and other broader data types (medical research papers, and financial reports), effectively overcoming the challenges inherent in each domain. Using the autonomous acquisition of thermodynamic data, an ML model was trained using the CatBoost algorithm for accurately predicting thermodynamic parameters (e.g., enthalpy of formation) of minerals. This work highlights the transformative potential of integrated ML approaches to reshape chemistry and materials science research.

Revealing the Hidden Temporal Structure of HubertSoft Embeddings based on the Russian Phonetic Corpus

Self-supervised learning (SSL) models such as Wav2Vec 2.0 and HuBERT have shown remarkable success in extracting phonetic information from raw audio without labelled data. While prior work has demonstrated that SSL embeddings encode phonetic features at the frame level, it remains unclear whether these models preserve temporal structure, specifically, whether embeddings at phoneme boundaries reflect the identity and order of adjacent phonemes. This study investigates the extent to which boundary-sensitive embeddings from HubertSoft, a soft-clustering variant of HuBERT, encode phoneme transitions. Using the CORPRES Russian speech corpus, we labelled 20 ms embedding windows with triplets of phonemes corresponding to their start, centre, and end segments. A neural network was trained to predict these positions separately, and multiple evaluation metrics, such as ordered, unordered accuracy and a flexible centre accuracy, were used to assess temporal sensitivity. Results show that embeddings extracted at phoneme boundaries capture both phoneme identity and temporal order, with especially high accuracy at segment boundaries. Confusion patterns further suggest that the model encodes articulatory detail and coarticulatory effects. These findings contribute to our understanding of the internal structure of SSL speech representations and their potential for phonological analysis and fine-grained transcription tasks.

Text to model via SysML: Automated generation of dynamical system computational models from unstructured natural language text via enhanced System Modeling Language diagrams

This paper contributes to speeding up the design and deployment of engineering dynamical systems by proposing a strategy for exploiting domain and expert knowledge for the automated generation of dynamical system computational model starting from a corpus of document relevant to the dynamical system of interest and an input document describing the specific system. This strategy is implemented in five steps and, crucially, it uses system modeling language diagrams (SysML) to extract accurate information about the dependencies, attributes, and operations of components. Natural Language Processing (NLP) strategies and Large Language Models (LLMs) are employed in specific tasks to improve intermediate outputs of the SySML diagrams automated generation, such as: list of key nouns; list of extracted relationships; list of key phrases and key relationships; block attribute values; block relationships; and BDD diagram generation. The applicability of automated SysML diagram generation is illustrated with different case studies. The computational models of complex dynamical systems from SysML diagrams are then obtained via code generation and computational model generation steps. In the code generation step, NLP strategies are used for summarization, while LLMs are used for validation only. The proposed approach is not limited to a specific system, domain, or computational software. The applicability of the proposed approach is shown via an end-to-end example from text to model of a simple pendulum, showing improved performance compared to results yielded by LLMs only.

MeD-3D: A Multimodal Deep Learning Framework for Precise Recurrence Prediction in Clear Cell Renal Cell Carcinoma (ccRCC)

Accurate prediction of recurrence in clear cell renal cell carcinoma (ccRCC) remains a major clinical challenge due to the disease complex molecular, pathological, and clinical heterogeneity. Traditional prognostic models, which rely on single data modalities such as radiology, histopathology, or genomics, often fail to capture the full spectrum of disease complexity, resulting in suboptimal predictive accuracy. This study aims to overcome these limitations by proposing a deep learning (DL) framework that integrates multimodal data, including CT, MRI, histopathology whole slide images (WSI), clinical data, and genomic profiles, to improve the prediction of ccRCC recurrence and enhance clinical decision-making. The proposed framework utilizes a comprehensive dataset curated from multiple publicly available sources, including TCGA, TCIA, and CPTAC. To process the diverse modalities, domain-specific models are employed: CLAM, a ResNet50-based model, is used for histopathology WSIs, while MeD-3D, a pre-trained 3D-ResNet18 model, processes CT and MRI images. For structured clinical and genomic data, a multi-layer perceptron (MLP) is used. These models are designed to extract deep feature embeddings from each modality, which are then fused through an early and late integration architecture. This fusion strategy enables the model to combine complementary information from multiple sources. Additionally, the framework is designed to handle incomplete data, a common challenge in clinical settings, by enabling inference even when certain modalities are missing.

T-GVC: Trajectory-Guided Generative Video Coding at Ultra-Low Bitrates

Recent advances in video generation techniques have given rise to an emerging paradigm of generative video coding, aiming to achieve semantically accurate reconstructions in Ultra-Low Bitrate (ULB) scenarios by leveraging strong generative priors. However, most existing methods are limited by domain specificity (e.g., facial or human videos) or an excessive dependence on high-level text guidance, which often fails to capture motion details and results in unrealistic reconstructions. To address these challenges, we propose a Trajectory-Guided Generative Video Coding framework (dubbed T-GVC). T-GVC employs a semantic-aware sparse motion sampling pipeline to effectively bridge low-level motion tracking with high-level semantic understanding by extracting pixel-wise motion as sparse trajectory points based on their semantic importance, not only significantly reducing the bitrate but also preserving critical temporal semantic information. In addition, by incorporating trajectory-aligned loss constraints into diffusion processes, we introduce a training-free latent space guidance mechanism to ensure physically plausible motion patterns without sacrificing the inherent capabilities of generative models. Experimental results demonstrate that our framework outperforms both traditional codecs and state-of-the-art end-to-end video compression methods under ULB conditions. Furthermore, additional experiments confirm that our approach achieves more precise motion control than existing text-guided methods, paving the way for a novel direction of generative video coding guided by geometric motion modeling.