JEL: A Novel Model Linking Knowledge Graph entities to News Mentions

We present JEL, a novel computationally efficient end-to-end multi-neural network based entity linking model, which beats current state-of-art model. Knowledge Graphs have emerged as a compelling abstraction for capturing critical relationships among the entities of interest and integrating data from multiple heterogeneous sources. A core problem in leveraging a knowledge graph is linking its entities to the mentions (e.g., people, company names) that are encountered in textual sources (e.g., news, blogs., etc) correctly, since there are thousands of entities to consider for each mention. This task of linking mentions and entities is referred as Entity Linking (EL). It is a fundamental task in natural language processing and is beneficial in various uses cases, such as building a New Analytics platform. News Analytics, in JPMorgan, is an essential task that benefits multiple groups across the firm. According to a survey conducted by the Innovation Digital team 1 , around 25 teams across the firm are actively looking for news analytics solutions, and more than \$2 million is being spent annually on external vendor costs. Entity linking is critical for bridging unstructured news text with knowledge graphs, enabling users access to vast amounts of curated data in a knowledge graph and dramatically facilitating their daily work.

BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignment

In recent years, there has been substantial progress in using pretrained Language Models (LMs) on a range of tasks aimed at improving the understanding of biomedical texts. Nonetheless, existing biomedical LLMs show limited comprehension of complex, domain-specific concept structures and the factual information encoded in biomedical Knowledge Graphs (KGs). In this work, we propose BALI (Biomedical Knowledge Graph and Language Model Alignment), a novel joint LM and KG pre-training method that augments an LM with external knowledge by the simultaneous learning of a dedicated KG encoder and aligning the representations of both the LM and the graph. For a given textual sequence, we link biomedical concept mentions to the Unified Medical Language System (UMLS) KG and utilize local KG subgraphs as cross-modal positive samples for these mentions. Our empirical findings indicate that implementing our method on several leading biomedical LMs, such as PubMedBERT and BioLinkBERT, improves their performance on a range of language understanding tasks and the quality of entity representations, even with minimal pre-training on a small alignment dataset sourced from PubMed scientific abstracts.

Using LLMs for Multilingual Clinical Entity Linking to ICD-10

The linking of clinical entities is a crucial part of extracting structured information from clinical texts. It is the process of assigning a code from a medical ontology or classification to a phrase in the text. The International Classification of Diseases - 10th revision (ICD-10) is an international standard for classifying diseases for statistical and insurance purposes. Automatically assigning the correct ICD-10 code to terms in discharge summaries will simplify the work of healthcare professionals and ensure consistent coding in hospitals. Our paper proposes an approach for linking clinical terms to ICD-10 codes in different languages using Large Language Models (LLMs). The approach consists of a multistage pipeline that uses clinical dictionaries to match unambiguous terms in the text and then applies in-context learning with GPT-4.1 to predict the ICD-10 code for the terms that do not match the dictionary. Our system shows promising results in predicting ICD-10 codes on different benchmark datasets in Spanish - 0.89 F1 for categories and 0.78 F1 on subcategories on CodiEsp, and Greek - 0.85 F1 on ElCardioCC.

KGRAG-SC: Knowledge Graph RAG-Assisted Semantic Communication

The state-of-the-art semantic communication (SC) schemes typically rely on end-to-end deep learning frameworks that lack interpretability and struggle with robust semantic selection and reconstruction under noisy conditions. To address this issue, this paper presents KGRAG-SC, a knowledge graph-assisted SC framework that leverages retrieval-augmented generation principles. KGRAG-SC employs a multi-dimensional knowledge graph, enabling efficient semantic extraction through community-guided entity linking and GraphRAG-assisted processing. The transmitter constructs minimal connected subgraphs that capture essential semantic relationships and transmits only compact entity indices rather than full text or semantic triples. An importance-aware adaptive transmission strategy provides unequal error protection based on structural centrality metrics, prioritizing critical semantic elements under adverse channel conditions. At the receiver, large language models perform knowledge-driven text reconstruction using the shared knowledge graph as structured context, ensuring robust semantic recovery even with partial information loss. Experimental results demonstrate that KGRAG-SC achieves superior semantic fidelity in low Signal-to-Noise Ratio (SNR) conditions while significantly reducing transmission overhead compared to traditional communication methods, highlighting the effectiveness of integrating structured knowledge representation with generative language models for SC systems.

AI-Driven Drug Repurposing through miRNA-mRNA Relation

miRNA mRNA relations are closely linked to several biological processes and disease mechanisms In a recent study we tested the performance of large language models LLMs on extracting miRNA mRNA relations from PubMed PubMedBERT achieved the best performance of 0.783 F1 score for miRNA mRNA Interaction Corpus MMIC Here we first applied the finetuned PubMedBERT model to extract miRNA mRNA relations from PubMed for chronic obstructive pulmonary disease COPD Alzheimers disease AD stroke type 2 diabetes mellitus T2DM chronic liver disease and cancer Next we retrieved miRNA drug relations using KinderMiner a literature mining tool for relation extraction Then we constructed three interaction networks 1 disease centric network 2 drug centric network and 3 miRNA centric network comprising 3497 nodes and 16417 edges organized as a directed graph to capture complex biological relationships Finally we validated the drugs using MIMIC IV Our integrative approach revealed both established and novel candidate drugs for diseases under study through 595 miRNA drug relations extracted from PubMed To the best of our knowledge this is the first study to systematically extract and visualize relationships among four distinct biomedical entities miRNA mRNA drug and disease

Ontology-Based Concept Distillation for Radiology Report Retrieval and Labeling

Retrieval-augmented learning based on radiology reports has emerged as a promising direction to improve performance on long-tail medical imaging tasks, such as rare disease detection in chest X-rays. Most existing methods rely on comparing high-dimensional text embeddings from models like CLIP or CXR-BERT, which are often difficult to interpret, computationally expensive, and not well-aligned with the structured nature of medical knowledge. We propose a novel, ontology-driven alternative for comparing radiology report texts based on clinically grounded concepts from the Unified Medical Language System (UMLS). Our method extracts standardised medical entities from free-text reports using an enhanced pipeline built on RadGraph-XL and SapBERT. These entities are linked to UMLS concepts (CUIs), enabling a transparent, interpretable set-based representation of each report. We then define a task-adaptive similarity measure based on a modified and weighted version of the Tversky Index that accounts for synonymy, negation, and hierarchical relationships between medical entities. This allows efficient and semantically meaningful similarity comparisons between reports. We demonstrate that our approach outperforms state-of-the-art embedding-based retrieval methods in a radiograph classification task on MIMIC-CXR, particularly in long-tail settings. Additionally, we use our pipeline to generate ontology-backed disease labels for MIMIC-CXR, offering a valuable new resource for downstream learning tasks. Our work provides more explainable, reliable, and task-specific retrieval strategies in clinical AI systems, especially when interpretability and domain knowledge integration are essential. Our code is available at https://github.com/Felix-012/ontology-concept-distillation

CVBench: Evaluating Cross-Video Synergies for Complex Multimodal Understanding and Reasoning

While multimodal large language models (MLLMs) exhibit strong performance on single-video tasks (e.g., video question answering), their ability across multiple videos remains critically underexplored. However, this capability is essential for real-world applications, including multi-camera surveillance and cross-video procedural learning. To bridge this gap, we present CVBench, the first comprehensive benchmark designed to assess cross-video relational reasoning rigorously. CVBench comprises 1,000 question-answer pairs spanning three hierarchical tiers: cross-video object association (identifying shared entities), cross-video event association (linking temporal or causal event chains), and cross-video complex reasoning (integrating commonsense and domain knowledge). Built from five domain-diverse video clusters (e.g., sports, life records), the benchmark challenges models to synthesise information across dynamic visual contexts. Extensive evaluation of 10+ leading MLLMs (including GPT-4o, Gemini-2.0-flash, Qwen2.5-VL) under zero-shot or chain-of-thought prompting paradigms. Key findings reveal stark performance gaps: even top models, such as GPT-4o, achieve only 60% accuracy on causal reasoning tasks, compared to the 91% accuracy of human performance. Crucially, our analysis reveals fundamental bottlenecks inherent in current MLLM architectures, notably deficient inter-video context retention and poor disambiguation of overlapping entities. CVBench establishes a rigorous framework for diagnosing and advancing multi-video reasoning, offering architectural insights for next-generation MLLMs. The data and evaluation code are available at https://github.com/Hokhim2/CVBench.

Addressing Graph Anomaly Detection via Causal Edge Separation and Spectrum

In the real world, anomalous entities often add more legitimate connections while hiding direct links with other anomalous entities, leading to heterophilic structures in anomalous networks that most GNN-based techniques fail to address. Several works have been proposed to tackle this issue in the spatial domain. However, these methods overlook the complex relationships between node structure encoding, node features, and their contextual environment and rely on principled guidance, research on solving spectral domain heterophilic problems remains limited. This study analyzes the spectral distribution of nodes with different heterophilic degrees and discovers that the heterophily of anomalous nodes causes the spectral energy to shift from low to high frequencies. To address the above challenges, we propose a spectral neural network CES2-GAD based on causal edge separation for anomaly detection on heterophilic graphs. Firstly, CES2-GAD will separate the original graph into homophilic and heterophilic edges using causal interventions. Subsequently, various hybrid-spectrum filters are used to capture signals from the segmented graphs. Finally, representations from multiple signals are concatenated and input into a classifier to predict anomalies. Extensive experiments with real-world datasets have proven the effectiveness of the method we proposed.

An Entity Linking Agent for Question Answering

Some Question Answering (QA) systems rely on knowledge bases (KBs) to provide accurate answers. Entity Linking (EL) plays a critical role in linking natural language mentions to KB entries. However, most existing EL methods are designed for long contexts and do not perform well on short, ambiguous user questions in QA tasks. We propose an entity linking agent for QA, based on a Large Language Model that simulates human cognitive workflows. The agent actively identifies entity mentions, retrieves candidate entities, and makes decision. To verify the effectiveness of our agent, we conduct two experiments: tool-based entity linking and QA task evaluation. The results confirm the robustness and effectiveness of our agent.

DBLPLink 2.0 -- An Entity Linker for the DBLP Scholarly Knowledge Graph

In this work we present an entity linker for DBLP's 2025 version of RDF-based Knowledge Graph. Compared to the 2022 version, DBLP now considers publication venues as a new entity type called dblp:Stream. In the earlier version of DBLPLink, we trained KG-embeddings and re-rankers on a dataset to produce entity linkings. In contrast, in this work, we develop a zero-shot entity linker using LLMs using a novel method, where we re-rank candidate entities based on the log-probabilities of the "yes" token output at the penultimate layer of the LLM.