FutureBridge: Token Selection Beyond Local Preference in Collaborative Decoding

Token-level collaboration allows a large language model (LLM) to assist a small language model (SLM) when their predictions diverge. Existing methods either use LLM-generated intervention tokens or rank candidates with the LLM's next-token probabilities. Both rely on the LLM's local preference, even though an LLM-selected token may be difficult for the SLM to build on. We present FutureBridge, which ranks joint LLM-SLM token candidates according to how well they support the SLM's subsequent reasoning. During training, an answer-verified LLM trajectory supplies a fixed shared future, and a frozen SLM evaluates every candidate under this common context. The resulting counterfactual scores supervise a lightweight token reranker that observes only the current state and candidate token. At inference, FutureBridge uses the LLM only to expand the candidate pool, selects one token, and returns generation to the SLM without generating or appending a future suffix. Across five mathematical reasoning benchmarks, FutureBridge improves the Qwen3-1.7B SLM's Math Avg. by 35.1% relative to greedy SLM decoding. These results indicate that token selection benefits from modeling whether the receiving SLM can use each candidate to continue reasoning, rather than relying on the LLM's local preference alone.

Control-Anchored Residual Flow Matching Conditioned on Gene Geometry for Virtual Cell Perturbation Modeling

A central task in virtual cell modeling is predicting single-cell transcriptional responses to unseen genetic perturbations and drug combinations, and biological networks provide valuable priors on gene relationships. Existing graph-based models commonly use the same network to structure gene representations and mediate intergene interactions, thereby implicitly treating stable associations as perturbation-response pathways. Gene Ontology and control-derived coexpression networks encode relatively stable relationships rather than intervention-specific response directions or magnitudes. We therefore propose GeneGeoFlow, which conditions a control-anchored residual flow on gene-wise geometry derived from biological networks to learn intervention-specific transcriptional responses. GeneGeoFlow derives multi-scale spectral coordinates from Gene Ontology and control-derived coexpression networks. A perturbation-conditioned, gene-wise gating module selects relevant structural scales and network sources, yielding intervention-specific gene geometry. The resulting geometry conditions a control-anchored residual flow without explicitly propagating target-derived signals along the graph. Condition-wise optimal transport couples unpaired control and perturbed populations for training, while a Delta-correlation objective aligns the predicted and observed condition-level expression-shift directions. GeneGeoFlow achieves Pearson Delta scores of 0.8979 on the Norman additive benchmark and 0.9088 on five held-out drug combinations in the fixed ComboSciPlex test split. These results support perturbation-conditioned gene geometry as an effective structural prior for intervention-specific response prediction, without conflating stable gene relationships with response propagation.