Improving and Unifying Discrete&Continuous-time Discrete Denoising Diffusion

Discrete diffusion models have seen a surge of attention with applications on naturally discrete data such as language and graphs. Although discrete-time discrete diffusion has been established for a while, only recently Campbell et al. (2022) introduced the first framework for continuous-time discrete diffusion. However, their training and sampling processes differ significantly from the discrete-time version, necessitating nontrivial approximations for tractability. In this paper, we first present a series of mathematical simplifications of the variational lower bound that enable more accurate and easy-to-optimize training for discrete diffusion. In addition, we derive a simple formulation for backward denoising that enables exact and accelerated sampling, and importantly, an elegant unification of discrete-time and continuous-time discrete diffusion. Thanks to simpler analytical formulations, both forward and now also backward probabilities can flexibly accommodate any noise distribution, including different noise distributions for multi-element objects. Experiments show that our proposed USD3 (for Unified Simplified Discrete Denoising Diffusion) outperform all SOTA baselines on established datasets. We open-source our unified code at https://github.com/LingxiaoShawn/USD3.

Pard: Permutation-Invariant Autoregressive Diffusion for Graph Generation

Graph generation has been dominated by autoregressive models due to their simplicity and effectiveness, despite their sensitivity to ordering. Yet diffusion models have garnered increasing attention, as they offer comparable performance while being permutation-invariant. Current graph diffusion models generate graphs in a one-shot fashion, but they require extra features and thousands of denoising steps to achieve optimal performance. We introduce PARD, a Permutation-invariant Auto Regressive Diffusion model that integrates diffusion models with autoregressive methods. PARD harnesses the effectiveness and efficiency of the autoregressive model while maintaining permutation invariance without ordering sensitivity. Specifically, we show that contrary to sets, elements in a graph are not entirely unordered and there is a unique partial order for nodes and edges. With this partial order, PARD generates a graph in a block-by-block, autoregressive fashion, where each block's probability is conditionally modeled by a shared diffusion model with an equivariant network. To ensure efficiency while being expressive, we further propose a higher-order graph transformer, which integrates transformer with PPGN. Like GPT, we extend the higher-order graph transformer to support parallel training of all blocks. Without any extra features, PARD achieves state-of-the-art performance on molecular and non-molecular datasets, and scales to large datasets like MOSES containing 1.9M molecules.

PINNsFormer: A Transformer-Based Framework For Physics-Informed Neural Networks

Physics-Informed Neural Networks (PINNs) have emerged as a promising deep learning framework for approximating numerical solutions for partial differential equations (PDEs). While conventional PINNs and most related studies adopt fully-connected multilayer perceptrons (MLP) as the backbone structure, they have neglected the temporal relations in PDEs and failed to approximate the true solution. In this paper, we propose a novel Transformer-based framework, namely PINNsFormer, that accurately approximates PDEs' solutions by capturing the temporal dependencies with multi-head attention mechanisms in Transformer-based models. Instead of approximating point predictions, PINNsFormer adapts input vectors to pseudo sequences and point-wise PINNs loss to a sequential PINNs loss. In addition, PINNsFormer is equipped with a novel activation function, namely Wavelet, which anticipates the Fourier decomposition through deep neural networks. We empirically demonstrate PINNsFormer's ability to capture the PDE solutions for various scenarios, in which conventional PINNs have failed to learn. We also show that PINNsFormer achieves superior approximation accuracy on such problems than conventional PINNs with non-sensitive hyperparameters, in trade of marginal computational and memory costs, with extensive experiments.

Fast Unsupervised Deep Outlier Model Selection with Hypernetworks

Outlier detection (OD) finds many applications with a rich literature of numerous techniques. Deep neural network based OD (DOD) has seen a recent surge of attention thanks to the many advances in deep learning. In this paper, we consider a critical-yet-understudied challenge with unsupervised DOD, that is, effective hyperparameter (HP) tuning/model selection. While several prior work report the sensitivity of OD models to HPs, it becomes ever so critical for the modern DOD models that exhibit a long list of HPs. We introduce HYPER for tuning DOD models, tackling two fundamental challenges: (1) validation without supervision (due to lack of labeled anomalies), and (2) efficient search of the HP/model space (due to exponential growth in the number of HPs). A key idea is to design and train a novel hypernetwork (HN) that maps HPs onto optimal weights of the main DOD model. In turn, HYPER capitalizes on a single HN that can dynamically generate weights for many DOD models (corresponding to varying HPs), which offers significant speed-up. In addition, it employs meta-learning on historical OD tasks with labels to train a proxy validation function, likewise trained with our proposed HN efficiently. Extensive experiments on 35 OD tasks show that HYPER achieves high performance against 8 baselines with significant efficiency gains.

From Explanation to Action: An End-to-End Human-in-the-loop Framework for Anomaly Reasoning and Management

Anomalies are often indicators of malfunction or inefficiency in various systems such as manufacturing, healthcare, finance, surveillance, to name a few. While the literature is abundant in effective detection algorithms due to this practical relevance, autonomous anomaly detection is rarely used in real-world scenarios. Especially in high-stakes applications, a human-in-the-loop is often involved in processes beyond detection such as verification and troubleshooting. In this work, we introduce ALARM (for Analyst-in-the-Loop Anomaly Reasoning and Management); an end-to-end framework that supports the anomaly mining cycle comprehensively, from detection to action. Besides unsupervised detection of emerging anomalies, it offers anomaly explanations and an interactive GUI for human-in-the-loop processes -- visual exploration, sense-making, and ultimately action-taking via designing new detection rules -- that help close ``the loop'' as the new rules complement rule-based supervised detection, typical of many deployed systems in practice. We demonstrate \method's efficacy through a series of case studies with fraud analysts from the financial industry.

Benchmarking Node Outlier Detection on Graphs

Graph outlier detection is an emerging but crucial machine learning task with numerous applications. Despite the proliferation of algorithms developed in recent years, the lack of a standard and unified setting for performance evaluation limits their advancement and usage in real-world applications. To tap the gap, we present, (to our best knowledge) the first comprehensive unsupervised node outlier detection benchmark for graphs called UNOD, with the following highlights: (1) evaluating fourteen methods with backbone spanning from classical matrix factorization to the latest graph neural networks; (2) benchmarking the method performance with different types of injected outliers and organic outliers on real-world datasets; (3) comparing the efficiency and scalability of the algorithms by runtime and GPU memory usage on synthetic graphs at different scales. Based on the analyses of extensive experimental results, we discuss the pros and cons of current UNOD methods, and point out multiple crucial and promising future research directions.

Hyperparameter Sensitivity in Deep Outlier Detection: Analysis and a Scalable Hyper-Ensemble Solution

Outlier detection (OD) literature exhibits numerous algorithms as it applies to diverse domains. However, given a new detection task, it is unclear how to choose an algorithm to use, nor how to set its hyperparameter(s) (HPs) in unsupervised settings. HP tuning is an ever-growing problem with the arrival of many new detectors based on deep learning. While they have appealing properties such as task- driven representation learning and end-to-end optimization, deep models come with a long list of HPs. Surprisingly, the issue of model selection in the outlier mining literature has been "the elephant in the room"; a significant factor in unlocking the utmost potential of deep methods, yet little said or done to systematically tackle the issue. In the first part of this paper, we conduct the first large-scale analysis on the HP sensitivity of deep OD methods, and through more than 35,000 trained models, quantitatively demonstrate that model selection is inevitable. Next, we design a HP-robust and scalable deep hyper-ensemble model called ROBOD that assembles models with varying HP configurations, bypassing the choice paralysis. Importantly, we introduce novel strategies to speed up ensemble training, such as parameter sharing, batch/simultaneous training, and data subsampling, that allow us to train fewer models with fewer parameters. Extensive experiments on both image and tabular datasets show that ROBOD achieves and retains robust, state-of-the-art detection performance as compared to its modern counterparts, while taking only 2-10% of the time by the naive hyper-ensemble with independent training.

PyGOD: A Python Library for Graph Outlier Detection

PyGOD is an open-source Python library for detecting outliers on graph data. As the first comprehensive library of its kind, PyGOD supports a wide array of leading graph-based methods for node-, edge-, subgraph-, and graph-level outlier detection, under a unified, well-documented API designed for use by both researchers and practitioners. To overcome the scalability issue in large graphs, we provide advanced functionalities for selected models, including mini-batch and sampling. PyGOD is equipped with best practices to foster code reliability and maintainability, including unit testing, continuous integration, and code coverage. To foster accessibility, PyGOD is released under a permissive BSD-license at https://github.com/pygod-team/pygod/ and the Python Package Index (PyPI).

Causal inference using deep neural networks

Causal inference from observation data is a core problem in many scientific fields. Here we present a general supervised deep learning framework that infers causal interactions by transforming the input vectors to an image-like representation for every pair of inputs. Given a training dataset we first construct a normalized empirical probability density distribution (NEPDF) matrix. We then train a convolutional neural network (CNN) on NEPDFs for causality predictions. We tested the method on several different simulated and real world data and compared it to prior methods for causal inference. As we show, the method is general, can efficiently handle very large datasets and improves upon prior methods.

SUOD: Toward Scalable Unsupervised Outlier Detection

Outlier detection is a key field of machine learning for identifying abnormal data objects. Due to the high expense of acquiring ground truth, unsupervised models are often chosen in practice. To compensate for the unstable nature of unsupervised algorithms, practitioners from high-stakes fields like finance, health, and security, prefer to build a large number of models for further combination and analysis. However, this poses scalability challenges in high-dimensional large datasets. In this study, we propose a three-module acceleration framework called SUOD to expedite the training and prediction with a large number of unsupervised detection models. SUOD's Random Projection module can generate lower subspaces for high-dimensional datasets while reserving their distance relationship. Balanced Parallel Scheduling module can forecast the training and prediction cost of models with high confidence---so the task scheduler could assign nearly equal amount of taskload among workers for efficient parallelization. SUOD also comes with a Pseudo-supervised Approximation module, which can approximate fitted unsupervised models by lower time complexity supervised regressors for fast prediction on unseen data. It may be considered as an unsupervised model knowledge distillation process. Notably, all three modules are independent with great flexibility to "mix and match"; a combination of modules can be chosen based on use cases. Extensive experiments on more than 30 benchmark datasets have shown the efficacy of SUOD, and a comprehensive future development plan is also presented.