Deep Learning in Computer-Aided Diagnosis and Treatment of Tumors: A Survey

Computer-Aided Diagnosis and Treatment of Tumors is a hot topic of deep learning in recent years, which constitutes a series of medical tasks, such as detection of tumor markers, the outline of tumor leisures, subtypes and stages of tumors, prediction of therapeutic effect, and drug development. Meanwhile, there are some deep learning models with precise positioning and excellent performance produced in mainstream task scenarios. Thus follow to introduce deep learning methods from task-orient, mainly focus on the improvements for medical tasks. Then to summarize the recent progress in four stages of tumor diagnosis and treatment, which named In-Vitro Diagnosis (IVD), Imaging Diagnosis (ID), Pathological Diagnosis (PD), and Treatment Planning (TP). According to the specific data types and medical tasks of each stage, we present the applications of deep learning in the Computer-Aided Diagnosis and Treatment of Tumors and analyzing the excellent works therein. This survey concludes by discussing research issues and suggesting challenges for future improvement.

Lightweight Generative Adversarial Networks for Text-Guided Image Manipulation

We propose a novel lightweight generative adversarial network for efficient image manipulation using natural language descriptions. To achieve this, a new word-level discriminator is proposed, which provides the generator with fine-grained training feedback at word-level, to facilitate training a lightweight generator that has a small number of parameters, but can still correctly focus on specific visual attributes of an image, and then edit them without affecting other contents that are not described in the text. Furthermore, thanks to the explicit training signal related to each word, the discriminator can also be simplified to have a lightweight structure. Compared with the state of the art, our method has a much smaller number of parameters, but still achieves a competitive manipulation performance. Extensive experimental results demonstrate that our method can better disentangle different visual attributes, then correctly map them to corresponding semantic words, and thus achieve a more accurate image modification using natural language descriptions.

Coherent Hierarchical Multi-Label Classification Networks

Hierarchical multi-label classification (HMC) is a challenging classification task extending standard multi-label classification problems by imposing a hierarchy constraint on the classes. In this paper, we propose C-HMCNN(h), a novel approach for HMC problems, which, given a network h for the underlying multi-label classification problem, exploits the hierarchy information in order to produce predictions coherent with the constraint and improve performance. We conduct an extensive experimental analysis showing the superior performance of C-HMCNN(h) when compared to state-of-the-art models.

Does the Objective Matter? Comparing Training Objectives for Pronoun Resolution

Hard cases of pronoun resolution have been used as a long-standing benchmark for commonsense reasoning. In the recent literature, pre-trained language models have been used to obtain state-of-the-art results on pronoun resolution. Overall, four categories of training and evaluation objectives have been introduced. The variety of training datasets and pre-trained language models used in these works makes it unclear whether the choice of training objective is critical. In this work, we make a fair comparison of the performance and seed-wise stability of four models that represent the four categories of objectives. Our experiments show that the objective of sequence ranking performs the best in-domain, while the objective of semantic similarity between candidates and pronoun performs the best out-of-domain. We also observe a seed-wise instability of the model using sequence ranking, which is not the case when the other objectives are used.

The Surprising Power of Graph Neural Networks with Random Node Initialization

Graph neural networks (GNNs) are effective models for representation learning on graph-structured data. However, standard GNNs are limited in their expressive power, as they cannot distinguish graphs beyond the capability of the Weisfeiler-Leman (1-WL) graph isomorphism heuristic. This limitation motivated a large body of work, including higher-order GNNs, which are provably more powerful models. To date, higher-order invariant and equivariant networks are the only models with known universality results, but these results are practically hindered by prohibitive computational complexity. Thus, despite their limitations, standard GNNs are commonly used, due to their strong practical performance. In practice, GNNs have shown a promising performance when enhanced with random node initialization (RNI), where the idea is to train and run the models with randomized initial node features. In this paper, we analyze the expressive power of GNNs with RNI, and pose the following question: are GNNs with RNI more expressive than GNNs? We prove that this is indeed the case, by showing that GNNs with RNI are universal, a first such result for GNNs not relying on computationally demanding higher-order properties. We then empirically analyze the effect of RNI on GNNs, based on carefully constructed datasets. Our empirical findings support the superior performance of GNNs with RNI over standard GNNs. In fact, we demonstrate that the performance of GNNs with RNI is often comparable with or better than that of higher-order GNNs, while keeping the much lower memory requirements of standard GNNs. However, this improvement typically comes at the cost of slower model convergence. Somewhat surprisingly, we found that the convergence rate and the accuracy of the models can be improved by using only a partial random initialization regime.

The Struggles of Feature-Based Explanations: Shapley Values vs. Minimal Sufficient Subsets

For neural models to garner widespread public trust and ensure fairness, we must have human-intelligible explanations for their predictions. Recently, an increasing number of works focus on explaining the predictions of neural models in terms of the relevance of the input features. In this work, we show that feature-based explanations pose problems even for explaining trivial models. We show that, in certain cases, there exist at least two ground-truth feature-based explanations, and that, sometimes, neither of them is enough to provide a complete view of the decision-making process of the model. Moreover, we show that two popular classes of explainers, Shapley explainers and minimal sufficient subsets explainers, target fundamentally different types of ground-truth explanations, despite the apparently implicit assumption that explainers should look for one specific feature-based explanation. These findings bring an additional dimension to consider in both developing and choosing explainers.

Knowledge Graph Extraction from Videos

Nearly all existing techniques for automated video annotation (or captioning) describe videos using natural language sentences. However, this has several shortcomings: (i) it is very hard to then further use the generated natural language annotations in automated data processing, (ii) generating natural language annotations requires to solve the hard subtask of generating semantically precise and syntactically correct natural language sentences, which is actually unrelated to the task of video annotation, (iii) it is difficult to quantitatively measure performance, as standard metrics (e.g., accuracy and F1-score) are inapplicable, and (iv) annotations are language-specific. In this paper, we propose the new task of knowledge graph extraction from videos, i.e., producing a description in the form of a knowledge graph of the contents of a given video. Since no datasets exist for this task, we also include a method to automatically generate them, starting from datasets where videos are annotated with natural language. We then describe an initial deep-learning model for knowledge graph extraction from videos, and report results on MSVD* and MSR-VTT*, two datasets obtained from MSVD and MSR-VTT using our method.

BoxE: A Box Embedding Model for Knowledge Base Completion

Knowledge base completion (KBC) aims to automatically infer missing facts by exploiting information already present in a knowledge base (KB). A promising approach for KBC is to embed knowledge into latent spaces and make predictions from learned embeddings. However, existing embedding models are subject to at least one of the following limitations: (1) theoretical inexpressivity, (2) lack of support for prominent inference patterns (e.g., hierarchies), (3) lack of support for KBC over higher-arity relations, and (4) lack of support for incorporating logical rules. Here, we propose a spatio-translational embedding model, called BoxE, that simultaneously addresses all these limitations. BoxE embeds entities as points, and relations as a set of hyper-rectangles (or boxes), which spatially characterize basic logical properties. This seemingly simple abstraction yields a fully expressive model offering a natural encoding for many desired logical properties. BoxE can both capture and inject rules from rich classes of rule languages, going well beyond individual inference patterns. By design, BoxE naturally applies to higher-arity KBs. We conduct a detailed experimental analysis, and show that BoxE achieves state-of-the-art performance, both on benchmark knowledge graphs and on more general KBs, and we empirically show the power of integrating logical rules.

A Review of Winograd Schema Challenge Datasets and Approaches

The Winograd Schema Challenge is both a commonsense reasoning and natural language understanding challenge, introduced as an alternative to the Turing test. A Winograd schema is a pair of sentences differing in one or two words with a highly ambiguous pronoun, resolved differently in the two sentences, that appears to require commonsense knowledge to be resolved correctly. The examples were designed to be easily solvable by humans but difficult for machines, in principle requiring a deep understanding of the content of the text and the situation it describes. This paper reviews existing Winograd Schema Challenge benchmark datasets and approaches that have been published since its introduction.

e-SNLI-VE-2.0: Corrected Visual-Textual Entailment with Natural Language Explanations

The recently proposed SNLI-VE corpus for recognising visual-textual entailment is a large, real-world dataset for fine-grained multimodal reasoning. However, the automatic way in which SNLI-VE has been assembled (via combining parts of two related datasets) gives rise to a large number of errors in the labels of this corpus. In this paper, we first present a data collection effort to correct the class with the highest error rate in SNLI-VE. Secondly, we re-evaluate an existing model on the corrected corpus, which we call SNLI-VE-2.0, and provide a quantitative comparison with its performance on the non-corrected corpus. Thirdly, we introduce e-SNLI-VE-2.0, which appends human-written natural language explanations to SNLI-VE-2.0. Finally, we train models that learn from these explanations at training time, and output such explanations at testing time.