DANCE: Detect and Classify Events in EEG

Event identification in continuous neural recordings is a critical task in neuroscience. Decoding in EEG is dominated by classifying windows aligned to known event onsets. However, while available in controlled experiments, such onsets are absent in continuous real-world monitoring. Here, we introduce DANCE, a deep learning pipeline that frames neural decoding as a set-prediction problem and jointly detects and classifies events directly from raw, unaligned signals. Evaluated separately on ten datasets curated from the literature with a wide variety of event types (ranging from milliseconds to minutes in duration), our model outperforms existing methods on a broad range of cognitive, clinical and BCI tasks. This single architecture establishes a new state of the art in the competitive task of seizure monitoring and matches the accuracy of onset-informed models for BCI tasks. Overall, our method marks a step towards end-to-end asynchronous neural decoding models

A foundation model of vision, audition, and language for in-silico neuroscience

Cognitive neuroscience is fragmented into specialized models, each tailored to specific experimental paradigms, hence preventing a unified model of cognition in the human brain. Here, we introduce TRIBE v2, a tri-modal (video, audio and language) foundation model capable of predicting human brain activity in a variety of naturalistic and experimental conditions. Leveraging a unified dataset of over 1,000 hours of fMRI across 720 subjects, we demonstrate that our model accurately predicts high-resolution brain responses for novel stimuli, tasks and subjects, superseding traditional linear encoding models, delivering several-fold improvements in accuracy. Critically, TRIBE v2 enables in silico experimentation: tested on seminal visual and neuro-linguistic paradigms, it recovers a variety of results established by decades of empirical research. Finally, by extracting interpretable latent features, TRIBE v2 reveals the fine-grained topography of multisensory integration. These results establish artificial intelligence as a unifying framework for exploring the functional organization of the human brain.

TRIBE: TRImodal Brain Encoder for whole-brain fMRI response prediction

Historically, neuroscience has progressed by fragmenting into specialized domains, each focusing on isolated modalities, tasks, or brain regions. While fruitful, this approach hinders the development of a unified model of cognition. Here, we introduce TRIBE, the first deep neural network trained to predict brain responses to stimuli across multiple modalities, cortical areas and individuals. By combining the pretrained representations of text, audio and video foundational models and handling their time-evolving nature with a transformer, our model can precisely model the spatial and temporal fMRI responses to videos, achieving the first place in the Algonauts 2025 brain encoding competition with a significant margin over competitors. Ablations show that while unimodal models can reliably predict their corresponding cortical networks (e.g. visual or auditory networks), they are systematically outperformed by our multimodal model in high-level associative cortices. Currently applied to perception and comprehension, our approach paves the way towards building an integrative model of representations in the human brain. Our code is available at https://github.com/facebookresearch/algonauts-2025.

Brain-to-Text Decoding: A Non-invasive Approach via Typing

Modern neuroprostheses can now restore communication in patients who have lost the ability to speak or move. However, these invasive devices entail risks inherent to neurosurgery. Here, we introduce a non-invasive method to decode the production of sentences from brain activity and demonstrate its efficacy in a cohort of 35 healthy volunteers. For this, we present Brain2Qwerty, a new deep learning architecture trained to decode sentences from either electro- (EEG) or magneto-encephalography (MEG), while participants typed briefly memorized sentences on a QWERTY keyboard. With MEG, Brain2Qwerty reaches, on average, a character-error-rate (CER) of 32% and substantially outperforms EEG (CER: 67%). For the best participants, the model achieves a CER of 19%, and can perfectly decode a variety of sentences outside of the training set. While error analyses suggest that decoding depends on motor processes, the analysis of typographical errors suggests that it also involves higher-level cognitive factors. Overall, these results narrow the gap between invasive and non-invasive methods and thus open the path for developing safe brain-computer interfaces for non-communicating patients.

Scaling laws for decoding images from brain activity

Generative AI has recently propelled the decoding of images from brain activity. How do these approaches scale with the amount and type of neural recordings? Here, we systematically compare image decoding from four types of non-invasive devices: electroencephalography (EEG), magnetoencephalography (MEG), high-field functional Magnetic Resonance Imaging (3T fMRI) and ultra-high field (7T) fMRI. For this, we evaluate decoding models on the largest benchmark to date, encompassing 8 public datasets, 84 volunteers, 498 hours of brain recording and 2.3 million brain responses to natural images. Unlike previous work, we focus on single-trial decoding performance to simulate real-time settings. This systematic comparison reveals three main findings. First, the most precise neuroimaging devices tend to yield the best decoding performances, when the size of the training sets are similar. However, the gain enabled by deep learning - in comparison to linear models - is obtained with the noisiest devices. Second, we do not observe any plateau of decoding performance as the amount of training data increases. Rather, decoding performance scales log-linearly with the amount of brain recording. Third, this scaling law primarily depends on the amount of data per subject. However, little decoding gain is observed by increasing the number of subjects. Overall, these findings delineate the path most suitable to scale the decoding of images from non-invasive brain recordings.

Decoding individual words from non-invasive brain recordings across 723 participants

Deep learning has recently enabled the decoding of language from the neural activity of a few participants with electrodes implanted inside their brain. However, reliably decoding words from non-invasive recordings remains an open challenge. To tackle this issue, we introduce a novel deep learning pipeline to decode individual words from non-invasive electro- (EEG) and magneto-encephalography (MEG) signals. We train and evaluate our approach on an unprecedentedly large number of participants (723) exposed to five million words either written or spoken in English, French or Dutch. Our model outperforms existing methods consistently across participants, devices, languages, and tasks, and can decode words absent from the training set. Our analyses highlight the importance of the recording device and experimental protocol: MEG and reading are easier to decode than EEG and listening, respectively, and it is preferable to collect a large amount of data per participant than to repeat stimuli across a large number of participants. Furthermore, decoding performance consistently increases with the amount of (i) data used for training and (ii) data used for averaging during testing. Finally, single-word predictions show that our model effectively relies on word semantics but also captures syntactic and surface properties such as part-of-speech, word length and even individual letters, especially in the reading condition. Overall, our findings delineate the path and remaining challenges towards building non-invasive brain decoders for natural language.

ODEFormer: Symbolic Regression of Dynamical Systems with Transformers

We introduce ODEFormer, the first transformer able to infer multidimensional ordinary differential equation (ODE) systems in symbolic form from the observation of a single solution trajectory. We perform extensive evaluations on two datasets: (i) the existing "Strogatz" dataset featuring two-dimensional systems; (ii) ODEBench, a collection of one- to four-dimensional systems that we carefully curated from the literature to provide a more holistic benchmark. ODEFormer consistently outperforms existing methods while displaying substantially improved robustness to noisy and irregularly sampled observations, as well as faster inference. We release our code, model and benchmark dataset publicly.

Boolformer: Symbolic Regression of Logic Functions with Transformers

In this work, we introduce Boolformer, the first Transformer architecture trained to perform end-to-end symbolic regression of Boolean functions. First, we show that it can predict compact formulas for complex functions which were not seen during training, when provided a clean truth table. Then, we demonstrate its ability to find approximate expressions when provided incomplete and noisy observations. We evaluate the Boolformer on a broad set of real-world binary classification datasets, demonstrating its potential as an interpretable alternative to classic machine learning methods. Finally, we apply it to the widespread task of modelling the dynamics of gene regulatory networks. Using a recent benchmark, we show that Boolformer is competitive with state-of-the art genetic algorithms with a speedup of several orders of magnitude. Our code and models are available publicly.

Length Generalization in Arithmetic Transformers

We examine how transformers cope with two challenges: learning basic integer arithmetic, and generalizing to longer sequences than seen during training. We find that relative position embeddings enable length generalization for simple tasks, such as addition: models trained on $5$-digit numbers can perform $15$-digit sums. However, this method fails for multiplication, and we propose train set priming: adding a few ($10$ to $50$) long sequences to the training set. We show that priming allows models trained on $5$-digit $\times$ $3$-digit multiplications to generalize to $35\times 3$ examples. We also show that models can be primed for different generalization lengths, and that the priming sample size scales as the logarithm of the training set size. Finally, we discuss potential applications of priming beyond arithmetic.

End-to-end symbolic regression with transformers

Symbolic regression, the task of predicting the mathematical expression of a function from the observation of its values, is a difficult task which usually involves a two-step procedure: predicting the "skeleton" of the expression up to the choice of numerical constants, then fitting the constants by optimizing a non-convex loss function. The dominant approach is genetic programming, which evolves candidates by iterating this subroutine a large number of times. Neural networks have recently been tasked to predict the correct skeleton in a single try, but remain much less powerful. In this paper, we challenge this two-step procedure, and task a Transformer to directly predict the full mathematical expression, constants included. One can subsequently refine the predicted constants by feeding them to the non-convex optimizer as an informed initialization. We present ablations to show that this end-to-end approach yields better results, sometimes even without the refinement step. We evaluate our model on problems from the SRBench benchmark and show that our model approaches the performance of state-of-the-art genetic programming with several orders of magnitude faster inference.