Most pretrained language models rely on subword tokenization, which processes text as a sequence of subword tokens. However, different granularities of text, such as characters, subwords, and words, can contain different kinds of information. Previous studies have shown that incorporating multiple input granularities improves model generalization, yet very few of them outputs useful representations for each granularity. In this paper, we introduce the entanglement model, aiming to combine character and subword language models. Inspired by vision-language models, our model treats characters and subwords as separate modalities, and it generates mutually informed representations for both granularities as output. We evaluate our model on text classification, named entity recognition, and POS-tagging tasks. Notably, the entanglement model outperforms its backbone language models, particularly in the presence of noisy texts and low-resource languages. Furthermore, the entanglement model even outperforms larger pre-trained models on all English sequence labeling tasks and classification tasks. Our anonymized code is available at https://anonymous.4open.science/r/noisy-IE-A673
Minimum Bayes Risk (MBR) decoding is a method for choosing the outputs of a machine learning system based not on the output with the highest probability, but the output with the lowest risk (expected error) among multiple candidates. It is a simple but powerful method: for an additional cost at inference time, MBR provides reliable several-point improvements across metrics for a wide variety of tasks without any additional data or training. Despite this, MBR is not frequently applied in NLP works, and knowledge of the method itself is limited. We first provide an introduction to the method and the recent literature. We show that several recent methods that do not reference MBR can be written as special cases of MBR; this reformulation provides additional theoretical justification for the performance of these methods, explaining some results that were previously only empirical. We provide theoretical and empirical results about the effectiveness of various MBR variants and make concrete recommendations for the application of MBR in NLP models, including future directions in this area.
We introduce a dataset for evidence/rationale extraction on an extreme multi-label classification task over long medical documents. One such task is Computer-Assisted Coding (CAC) which has improved significantly in recent years, thanks to advances in machine learning technologies. Yet simply predicting a set of final codes for a patient encounter is insufficient as CAC systems are required to provide supporting textual evidence to justify the billing codes. A model able to produce accurate and reliable supporting evidence for each code would be a tremendous benefit. However, a human annotated code evidence corpus is extremely difficult to create because it requires specialized knowledge. In this paper, we introduce MDACE, the first publicly available code evidence dataset, which is built on a subset of the MIMIC-III clinical records. The dataset -- annotated by professional medical coders -- consists of 302 Inpatient charts with 3,934 evidence spans and 52 Profee charts with 5,563 evidence spans. We implemented several evidence extraction methods based on the EffectiveCAN model (Liu et al., 2021) to establish baseline performance on this dataset. MDACE can be used to evaluate code evidence extraction methods for CAC systems, as well as the accuracy and interpretability of deep learning models for multi-label classification. We believe that the release of MDACE will greatly improve the understanding and application of deep learning technologies for medical coding and document classification.
Medical dialogue summarization is challenging due to the unstructured nature of medical conversations, the use of medical terminology in gold summaries, and the need to identify key information across multiple symptom sets. We present a novel system for the Dialogue2Note Medical Summarization tasks in the MEDIQA 2023 Shared Task. Our approach for section-wise summarization (Task A) is a two-stage process of selecting semantically similar dialogues and using the top-k similar dialogues as in-context examples for GPT-4. For full-note summarization (Task B), we use a similar solution with k=1. We achieved 3rd place in Task A (2nd among all teams), 4th place in Task B Division Wise Summarization (2nd among all teams), 15th place in Task A Section Header Classification (9th among all teams), and 8th place among all teams in Task B. Our results highlight the effectiveness of few-shot prompting for this task, though we also identify several weaknesses of prompting-based approaches. We compare GPT-4 performance with several finetuned baselines. We find that GPT-4 summaries are more abstractive and shorter. We make our code publicly available.
Transformer-based models typically have a predefined bound to their input length, because of their need to potentially attend to every token in the input. In this work, we propose Unlimiformer: a general approach that can wrap any existing pretrained encoder-decoder transformer, and offload the attention computation across all layers to a single $k$-nearest-neighbor index; this index can be kept on either the GPU or CPU memory and queried in sub-linear time. This way, we can index extremely long input sequences, while every attention head in every decoder layer retrieves its top-$k$ keys, instead of attending to every key. We demonstrate Unlimiformers's efficacy on several long-document and multi-document summarization benchmarks, showing that it can summarize even 350k token-long inputs from the BookSum dataset, without any input truncation at test time. Unlimiformer improves pretrained models such as BART and Longformer by extending them to unlimited inputs without additional learned weights and without modifying their code. We make our code and models publicly available at https://github.com/abertsch72/unlimiformer .
Scoring the factuality of a generated summary involves measuring the degree to which a target text contains factual information using the input document as support. Given the similarities in the problem formulation, previous work has shown that Natural Language Inference models can be effectively repurposed to perform this task. As these models are trained to score entailment at a sentence level, several recent studies have shown that decomposing either the input document or the summary into sentences helps with factuality scoring. But is fine-grained decomposition always a winning strategy? In this paper we systematically compare different granularities of decomposition -- from document to sub-sentence level, and we show that the answer is no. Our results show that incorporating additional context can yield improvement, but that this does not necessarily apply to all datasets. We also show that small changes to previously proposed entailment-based scoring methods can result in better performance, highlighting the need for caution in model and methodology selection for downstream tasks.
Much recent work has been devoted to the problem of ensuring that a neural network's confidence scores match the true probability of being correct, i.e. the calibration problem. Of note, it was found that training with focal loss leads to better calibration than cross-entropy while achieving similar level of accuracy \cite{mukhoti2020}. This success stems from focal loss regularizing the entropy of the model's prediction (controlled by the parameter $\gamma$), thereby reining in the model's overconfidence. Further improvement is expected if $\gamma$ is selected independently for each training sample (Sample-Dependent Focal Loss (FLSD-53) \cite{mukhoti2020}). However, FLSD-53 is based on heuristics and does not generalize well. In this paper, we propose a calibration-aware adaptive focal loss called AdaFocal that utilizes the calibration properties of focal (and inverse-focal) loss and adaptively modifies $\gamma_t$ for different groups of samples based on $\gamma_{t-1}$ from the previous step and the knowledge of model's under/over-confidence on the validation set. We evaluate AdaFocal on various image recognition and one NLP task, covering a wide variety of network architectures, to confirm the improvement in calibration while achieving similar levels of accuracy. Additionally, we show that models trained with AdaFocal achieve a significant boost in out-of-distribution detection.
In this work, we define a new style transfer task: perspective shift, which reframes a dialogue from informal first person to a formal third person rephrasing of the text. This task requires challenging coreference resolution, emotion attribution, and interpretation of informal text. We explore several baseline approaches and discuss further directions on this task when applied to short dialogues. As a sample application, we demonstrate that applying perspective shifting to a dialogue summarization dataset (SAMSum) substantially improves the zero-shot performance of extractive news summarization models on this data. Additionally, supervised extractive models perform better when trained on perspective shifted data than on the original dialogues. We release our code publicly.
When tasked with supporting multiple languages for a given problem, two approaches have arisen: training a model for each language with the annotation budget divided equally among them, and training on a high-resource language followed by zero-shot transfer to the remaining languages. In this work, we show that the strategy of joint learning across multiple languages using a single model performs substantially better than the aforementioned alternatives. We also demonstrate that active learning provides additional, complementary benefits. We show that this simple approach enables the model to be data efficient by allowing it to arbitrate its annotation budget to query languages it is less certain on. We illustrate the effectiveness of our proposed method on a diverse set of tasks: a classification task with 4 languages, a sequence tagging task with 4 languages and a dependency parsing task with 5 languages. Our proposed method, whilst simple, substantially outperforms the other viable alternatives for building a model in a multilingual setting under constrained budgets.
Fine-tuning pretrained models for automatically summarizing doctor-patient conversation transcripts presents many challenges: limited training data, significant domain shift, long and noisy transcripts, and high target summary variability. In this paper, we explore the feasibility of using pretrained transformer models for automatically summarizing doctor-patient conversations directly from transcripts. We show that fluent and adequate summaries can be generated with limited training data by fine-tuning BART on a specially constructed dataset. The resulting models greatly surpass the performance of an average human annotator and the quality of previous published work for the task. We evaluate multiple methods for handling long conversations, comparing them to the obvious baseline of truncating the conversation to fit the pretrained model length limit. We introduce a multistage approach that tackles the task by learning two fine-tuned models: one for summarizing conversation chunks into partial summaries, followed by one for rewriting the collection of partial summaries into a complete summary. Using a carefully chosen fine-tuning dataset, this method is shown to be effective at handling longer conversations, improving the quality of generated summaries. We conduct both an automatic evaluation (through ROUGE and two concept-based metrics focusing on medical findings) and a human evaluation (through qualitative examples from literature, assessing hallucination, generalization, fluency, and general quality of the generated summaries).