SurgT challenge: Benchmark of Soft-Tissue Trackers for Robotic Surgery

This paper introduces the "SurgT: Surgical Tracking" challenge which was organised in conjunction with the 25th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2022). There were two purposes for the creation of this challenge: (1) the establishment of the first standardised benchmark for the research community to assess soft-tissue trackers; and (2) to encourage the development of unsupervised deep learning methods, given the lack of annotated data in surgery. A dataset of 157 stereo endoscopic videos from 20 clinical cases, along with stereo camera calibration parameters, have been provided. The participants were tasked with the development of algorithms to track a bounding box on stereo endoscopic videos. At the end of the challenge, the developed methods were assessed on a previously hidden test subset. This assessment uses benchmarking metrics that were purposely developed for this challenge and are now available online. The teams were ranked according to their Expected Average Overlap (EAO) score, which is a weighted average of the Intersection over Union (IoU) scores. The performance evaluation study verifies the efficacy of unsupervised deep learning algorithms in tracking soft-tissue. The best-performing method achieved an EAO score of 0.583 in the test subset. The dataset and benchmarking tool created for this challenge have been made publicly available. This challenge is expected to contribute to the development of autonomous robotic surgery and other digital surgical technologies.

Biomedical image analysis competitions: The state of current participation practice

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

GaitTAKE: Gait Recognition by Temporal Attention and Keypoint-guided Embedding

Gait recognition, which refers to the recognition or identification of a person based on their body shape and walking styles, derived from video data captured from a distance, is widely used in crime prevention, forensic identification, and social security. However, to the best of our knowledge, most of the existing methods use appearance, posture and temporal feautures without considering a learned temporal attention mechanism for global and local information fusion. In this paper, we propose a novel gait recognition framework, called Temporal Attention and Keypoint-guided Embedding (GaitTAKE), which effectively fuses temporal-attention-based global and local appearance feature and temporal aggregated human pose feature. Experimental results show that our proposed method achieves a new SOTA in gait recognition with rank-1 accuracy of 98.0% (normal), 97.5% (bag) and 92.2% (coat) on the CASIA-B gait dataset; 90.4% accuracy on the OU-MVLP gait dataset.

Multi-Target Multi-Camera Tracking of Vehicles using Metadata-Aided Re-ID and Trajectory-Based Camera Link Model

In this paper, we propose a novel framework for multi-target multi-camera tracking (MTMCT) of vehicles based on metadata-aided re-identification (MA-ReID) and the trajectory-based camera link model (TCLM). Given a video sequence and the corresponding frame-by-frame vehicle detections, we first address the isolated tracklets issue from single camera tracking (SCT) by the proposed traffic-aware single-camera tracking (TSCT). Then, after automatically constructing the TCLM, we solve MTMCT by the MA-ReID. The TCLM is generated from camera topological configuration to obtain the spatial and temporal information to improve the performance of MTMCT by reducing the candidate search of ReID. We also use the temporal attention model to create more discriminative embeddings of trajectories from each camera to achieve robust distance measures for vehicle ReID. Moreover, we train a metadata classifier for MTMCT to obtain the metadata feature, which is concatenated with the temporal attention based embeddings. Finally, the TCLM and hierarchical clustering are jointly applied for global ID assignment. The proposed method is evaluated on the CityFlow dataset, achieving IDF1 76.77%, which outperforms the state-of-the-art MTMCT methods.