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BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing


Jun 30, 2022
Jason Alan Fries, Leon Weber, Natasha Seelam, Gabriel Altay, Debajyoti Datta, Samuele Garda, Myungsun Kang, Ruisi Su, Wojciech Kusa, Samuel Cahyawijaya, Fabio Barth, Simon Ott, Matthias Samwald, Stephen Bach, Stella Biderman, Mario Sänger, Bo Wang, Alison Callahan, Daniel León Periñán, Théo Gigant, Patrick Haller, Jenny Chim, Jose David Posada, John Michael Giorgi, Karthik Rangasai Sivaraman, Marc Pàmies, Marianna Nezhurina, Robert Martin, Michael Cullan, Moritz Freidank, Nathan Dahlberg, Shubhanshu Mishra, Shamik Bose, Nicholas Michio Broad, Yanis Labrak, Shlok S Deshmukh, Sid Kiblawi, Ayush Singh, Minh Chien Vu, Trishala Neeraj, Jonas Golde, Albert Villanova del Moral, Benjamin Beilharz

* Submitted to NeurIPS 2022 Datasets and Benchmarks Track 

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PromptSource: An Integrated Development Environment and Repository for Natural Language Prompts


Feb 02, 2022
Stephen H. Bach, Victor Sanh, Zheng-Xin Yong, Albert Webson, Colin Raffel, Nihal V. Nayak, Abheesht Sharma, Taewoon Kim, M Saiful Bari, Thibault Fevry, Zaid Alyafeai, Manan Dey, Andrea Santilli, Zhiqing Sun, Srulik Ben-David, Canwen Xu, Gunjan Chhablani, Han Wang, Jason Alan Fries, Maged S. Al-shaibani, Shanya Sharma, Urmish Thakker, Khalid Almubarak, Xiangru Tang, Xiangru Tang, Mike Tian-Jian Jiang, Alexander M. Rush


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RadFusion: Benchmarking Performance and Fairness for Multimodal Pulmonary Embolism Detection from CT and EHR


Nov 27, 2021
Yuyin Zhou, Shih-Cheng Huang, Jason Alan Fries, Alaa Youssef, Timothy J. Amrhein, Marcello Chang, Imon Banerjee, Daniel Rubin, Lei Xing, Nigam Shah, Matthew P. Lungren

* RadFusion dataset: https://stanfordaimi.azurewebsites.net/datasets/3a7548a4-8f65-4ab7-85fa-3d68c9efc1bd 

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Multitask Prompted Training Enables Zero-Shot Task Generalization


Oct 15, 2021
Victor Sanh, Albert Webson, Colin Raffel, Stephen H. Bach, Lintang Sutawika, Zaid Alyafeai, Antoine Chaffin, Arnaud Stiegler, Teven Le Scao, Arun Raja, Manan Dey, M Saiful Bari, Canwen Xu, Urmish Thakker, Shanya Sharma Sharma, Eliza Szczechla, Taewoon Kim, Gunjan Chhablani, Nihal Nayak, Debajyoti Datta, Jonathan Chang, Mike Tian-Jian Jiang, Han Wang, Matteo Manica, Sheng Shen, Zheng Xin Yong, Harshit Pandey, Rachel Bawden, Thomas Wang, Trishala Neeraj, Jos Rozen, Abheesht Sharma, Andrea Santilli, Thibault Fevry, Jason Alan Fries, Ryan Teehan, Stella Biderman, Leo Gao, Tali Bers, Thomas Wolf, Alexander M. Rush

* https://github.com/bigscience-workshop/promptsource/ 

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The accuracy vs. coverage trade-off in patient-facing diagnosis models


Dec 11, 2019
Anitha Kannan, Jason Alan Fries, Eric Kramer, Jen Jen Chen, Nigam Shah, Xavier Amatriain


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Machine Learning for Health (ML4H) Workshop at NeurIPS 2018


Nov 24, 2018
Natalia Antropova, Andrew L. Beam, Brett K. Beaulieu-Jones, Irene Chen, Corey Chivers, Adrian Dalca, Sam Finlayson, Madalina Fiterau, Jason Alan Fries, Marzyeh Ghassemi, Mike Hughes, Bruno Jedynak, Jasvinder S. Kandola, Matthew McDermott, Tristan Naumann, Peter Schulam, Farah Shamout, Alexandre Yahi

* Machine Learning for Health (ML4H) Workshop at NeurIPS 2018 arXiv:1811.07216 

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Brundlefly at SemEval-2016 Task 12: Recurrent Neural Networks vs. Joint Inference for Clinical Temporal Information Extraction


Jun 04, 2016
Jason Alan Fries

* NAACL HLT 2016, SemEval-2016 Task 12 submission 

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