TimeCSL: Unsupervised Contrastive Learning of General Shapelets for Explorable Time Series Analysis

Unsupervised (a.k.a. Self-supervised) representation learning (URL) has emerged as a new paradigm for time series analysis, because it has the ability to learn generalizable time series representation beneficial for many downstream tasks without using labels that are usually difficult to obtain. Considering that existing approaches have limitations in the design of the representation encoder and the learning objective, we have proposed Contrastive Shapelet Learning (CSL), the first URL method that learns the general-purpose shapelet-based representation through unsupervised contrastive learning, and shown its superior performance in several analysis tasks, such as time series classification, clustering, and anomaly detection. In this paper, we develop TimeCSL, an end-to-end system that makes full use of the general and interpretable shapelets learned by CSL to achieve explorable time series analysis in a unified pipeline. We introduce the system components and demonstrate how users interact with TimeCSL to solve different analysis tasks in the unified pipeline, and gain insight into their time series by exploring the learned shapelets and representation.

Unsupervised Multi-modal Feature Alignment for Time Series Representation Learning

In recent times, the field of unsupervised representation learning (URL) for time series data has garnered significant interest due to its remarkable adaptability across diverse downstream applications. Unsupervised learning goals differ from downstream tasks, making it tricky to ensure downstream task utility by focusing only on temporal feature characterization. Researchers have proposed multiple transformations to extract discriminative patterns implied in informative time series, trying to fill the gap. Despite the introduction of a variety of feature engineering techniques, e.g. spectral domain, wavelet transformed features, features in image form and symbolic features etc. the utilization of intricate feature fusion methods and dependence on heterogeneous features during inference hampers the scalability of the solutions. To address this, our study introduces an innovative approach that focuses on aligning and binding time series representations encoded from different modalities, inspired by spectral graph theory, thereby guiding the neural encoder to uncover latent pattern associations among these multi-modal features. In contrast to conventional methods that fuse features from multiple modalities, our proposed approach simplifies the neural architecture by retaining a single time series encoder, consequently leading to preserved scalability. We further demonstrate and prove mechanisms for the encoder to maintain better inductive bias. In our experimental evaluation, we validated the proposed method on a diverse set of time series datasets from various domains. Our approach outperforms existing state-of-the-art URL methods across diverse downstream tasks.

Image-Based Soil Organic Carbon Remote Sensing from Satellite Images with Fourier Neural Operator and Structural Similarity

Soil organic carbon (SOC) sequestration is the transfer and storage of atmospheric carbon dioxide in soils, which plays an important role in climate change mitigation. SOC concentration can be improved by proper land use, thus it is beneficial if SOC can be estimated at a regional or global scale. As multispectral satellite data can provide SOC-related information such as vegetation and soil properties at a global scale, estimation of SOC through satellite data has been explored as an alternative to manual soil sampling. Although existing studies show promising results, they are mainly based on pixel-based approaches with traditional machine learning methods, and convolutional neural networks (CNNs) are uncommon. To study the use of CNNs on SOC remote sensing, here we propose the FNO-DenseNet based on the Fourier neural operator (FNO). By combining the advantages of the FNO and DenseNet, the FNO-DenseNet outperformed the FNO in our experiments with hundreds of times fewer parameters. The FNO-DenseNet also outperformed a pixel-based random forest by 18% in the mean absolute percentage error.

FNOSeg3D: Resolution-Robust 3D Image Segmentation with Fourier Neural Operator

Due to the computational complexity of 3D medical image segmentation, training with downsampled images is a common remedy for out-of-memory errors in deep learning. Nevertheless, as standard spatial convolution is sensitive to variations in image resolution, the accuracy of a convolutional neural network trained with downsampled images can be suboptimal when applied on the original resolution. To address this limitation, we introduce FNOSeg3D, a 3D segmentation model robust to training image resolution based on the Fourier neural operator (FNO). The FNO is a deep learning framework for learning mappings between functions in partial differential equations, which has the appealing properties of zero-shot super-resolution and global receptive field. We improve the FNO by reducing its parameter requirement and enhancing its learning capability through residual connections and deep supervision, and these result in our FNOSeg3D model which is parameter efficient and resolution robust. When tested on the BraTS'19 dataset, it achieved superior robustness to training image resolution than other tested models with less than 1% of their model parameters.

HartleyMHA: Self-Attention in Frequency Domain for Resolution-Robust and Parameter-Efficient 3D Image Segmentation

With the introduction of Transformers, different attention-based models have been proposed for image segmentation with promising results. Although self-attention allows capturing of long-range dependencies, it suffers from a quadratic complexity in the image size especially in 3D. To avoid the out-of-memory error during training, input size reduction is usually required for 3D segmentation, but the accuracy can be suboptimal when the trained models are applied on the original image size. To address this limitation, inspired by the Fourier neural operator (FNO), we introduce the HartleyMHA model which is robust to training image resolution with efficient self-attention. FNO is a deep learning framework for learning mappings between functions in partial differential equations, which has the appealing properties of zero-shot super-resolution and global receptive field. We modify the FNO by using the Hartley transform with shared parameters to reduce the model size by orders of magnitude, and this allows us to further apply self-attention in the frequency domain for more expressive high-order feature combination with improved efficiency. When tested on the BraTS'19 dataset, it achieved superior robustness to training image resolution than other tested models with less than 1% of their model parameters.

Duet: efficient and scalable hybriD neUral rElation undersTanding

Learned cardinality estimation methods have achieved high precision compared to traditional methods. Among learned methods, query-driven approaches face the data and workload drift problem for a long time. Although both query-driven and hybrid methods are proposed to avoid this problem, even the state-of-the-art of them suffer from high training and estimation costs, limited scalability, instability, and long-tailed distribution problem on high cardinality and high-dimensional tables, which seriously affects the practical application of learned cardinality estimators. In this paper, we prove that most of these problems are directly caused by the widely used progressive sampling. We solve this problem by introducing predicates information into the autoregressive model and propose Duet, a stable, efficient, and scalable hybrid method to estimate cardinality directly without sampling or any non-differentiable process, which can not only reduces the inference complexity from O(n) to O(1) compared to Naru and UAE but also achieve higher accuracy on high cardinality and high-dimensional tables. Experimental results show that Duet can achieve all the design goals above and be much more practical and even has a lower inference cost on CPU than that of most learned methods on GPU.

MaxCorrMGNN: A Multi-Graph Neural Network Framework for Generalized Multimodal Fusion of Medical Data for Outcome Prediction

With the emergence of multimodal electronic health records, the evidence for an outcome may be captured across multiple modalities ranging from clinical to imaging and genomic data. Predicting outcomes effectively requires fusion frameworks capable of modeling fine-grained and multi-faceted complex interactions between modality features within and across patients. We develop an innovative fusion approach called MaxCorr MGNN that models non-linear modality correlations within and across patients through Hirschfeld-Gebelein-Renyi maximal correlation (MaxCorr) embeddings, resulting in a multi-layered graph that preserves the identities of the modalities and patients. We then design, for the first time, a generalized multi-layered graph neural network (MGNN) for task-informed reasoning in multi-layered graphs, that learns the parameters defining patient-modality graph connectivity and message passing in an end-to-end fashion. We evaluate our model an outcome prediction task on a Tuberculosis (TB) dataset consistently outperforming several state-of-the-art neural, graph-based and traditional fusion techniques.

Contrastive Shapelet Learning for Unsupervised Multivariate Time Series Representation Learning

Recent studies have shown great promise in unsupervised representation learning (URL) for multivariate time series, because URL has the capability in learning generalizable representation for many downstream tasks without using inaccessible labels. However, existing approaches usually adopt the models originally designed for other domains (e.g., computer vision) to encode the time series data and rely on strong assumptions to design learning objectives, which limits their ability to perform well. To deal with these problems, we propose a novel URL framework for multivariate time series by learning time-series-specific shapelet-based representation through a popular contrasting learning paradigm. To the best of our knowledge, this is the first work that explores the shapelet-based embedding in the unsupervised general-purpose representation learning. A unified shapelet-based encoder and a novel learning objective with multi-grained contrasting and multi-scale alignment are particularly designed to achieve our goal, and a data augmentation library is employed to improve the generalization. We conduct extensive experiments using tens of real-world datasets to assess the representation quality on many downstream tasks, including classification, clustering, and anomaly detection. The results demonstrate the superiority of our method against not only URL competitors, but also techniques specially designed for downstream tasks. Our code has been made publicly available at https://github.com/real2fish/CSL.

TodyNet: Temporal Dynamic Graph Neural Network for Multivariate Time Series Classification

Multivariate time series classification (MTSC) is an important data mining task, which can be effectively solved by popular deep learning technology. Unfortunately, the existing deep learning-based methods neglect the hidden dependencies in different dimensions and also rarely consider the unique dynamic features of time series, which lack sufficient feature extraction capability to obtain satisfactory classification accuracy. To address this problem, we propose a novel temporal dynamic graph neural network (TodyNet) that can extract hidden spatio-temporal dependencies without undefined graph structure. It enables information flow among isolated but implicit interdependent variables and captures the associations between different time slots by dynamic graph mechanism, which further improves the classification performance of the model. Meanwhile, the hierarchical representations of graphs cannot be learned due to the limitation of GNNs. Thus, we also design a temporal graph pooling layer to obtain a global graph-level representation for graph learning with learnable temporal parameters. The dynamic graph, graph information propagation, and temporal convolution are jointly learned in an end-to-end framework. The experiments on 26 UEA benchmark datasets illustrate that the proposed TodyNet outperforms existing deep learning-based methods in the MTSC tasks.

UniTS: A Universal Time Series Analysis Framework with Self-supervised Representation Learning

Machine learning has emerged as a powerful tool for time series analysis. Existing methods are usually customized for different analysis tasks and face challenges in tackling practical problems such as partial labeling and domain shift. To achieve universal analysis and address the aforementioned problems, we develop UniTS, a novel framework that incorporates self-supervised representation learning (or pre-training). The components of UniTS are designed using sklearn-like APIs to allow flexible extensions. We demonstrate how users can easily perform an analysis task using the user-friendly GUIs, and show the superior performance of UniTS over the traditional task-specific methods without self-supervised pre-training on five mainstream tasks and two practical settings.