Navigating the Latent Space Dynamics of Neural Models

Neural networks transform high-dimensional data into compact, structured representations, often modeled as elements of a lower dimensional latent space. In this paper, we present an alternative interpretation of neural models as dynamical systems acting on the latent manifold. Specifically, we show that autoencoder models implicitly define a latent vector field on the manifold, derived by iteratively applying the encoding-decoding map, without any additional training. We observe that standard training procedures introduce inductive biases that lead to the emergence of attractor points within this vector field. Drawing on this insight, we propose to leverage the vector field as a representation for the network, providing a novel tool to analyze the properties of the model and the data. This representation enables to: (i) analyze the generalization and memorization regimes of neural models, even throughout training; (ii) extract prior knowledge encoded in the network's parameters from the attractors, without requiring any input data; (iii) identify out-of-distribution samples from their trajectories in the vector field. We further validate our approach on vision foundation models, showcasing the applicability and effectiveness of our method in real-world scenarios.

The Third Pillar of Causal Analysis? A Measurement Perspective on Causal Representations

Causal reasoning and discovery, two fundamental tasks of causal analysis, often face challenges in applications due to the complexity, noisiness, and high-dimensionality of real-world data. Despite recent progress in identifying latent causal structures using causal representation learning (CRL), what makes learned representations useful for causal downstream tasks and how to evaluate them are still not well understood. In this paper, we reinterpret CRL using a measurement model framework, where the learned representations are viewed as proxy measurements of the latent causal variables. Our approach clarifies the conditions under which learned representations support downstream causal reasoning and provides a principled basis for quantitatively assessing the quality of representations using a new Test-based Measurement EXclusivity (T-MEX) score. We validate T-MEX across diverse causal inference scenarios, including numerical simulations and real-world ecological video analysis, demonstrating that the proposed framework and corresponding score effectively assess the identification of learned representations and their usefulness for causal downstream tasks.

Mechanistic PDE Networks for Discovery of Governing Equations

We present Mechanistic PDE Networks -- a model for discovery of governing partial differential equations from data. Mechanistic PDE Networks represent spatiotemporal data as space-time dependent linear partial differential equations in neural network hidden representations. The represented PDEs are then solved and decoded for specific tasks. The learned PDE representations naturally express the spatiotemporal dynamics in data in neural network hidden space, enabling increased power for dynamical modeling. Solving the PDE representations in a compute and memory-efficient way, however, is a significant challenge. We develop a native, GPU-capable, parallel, sparse, and differentiable multigrid solver specialized for linear partial differential equations that acts as a module in Mechanistic PDE Networks. Leveraging the PDE solver, we propose a discovery architecture that can discover nonlinear PDEs in complex settings while also being robust to noise. We validate PDE discovery on a number of PDEs, including reaction-diffusion and Navier-Stokes equations.

Causal Lifting of Neural Representations: Zero-Shot Generalization for Causal Inferences

A plethora of real-world scientific investigations is waiting to scale with the support of trustworthy predictive models that can reduce the need for costly data annotations. We focus on causal inferences on a target experiment with unlabeled factual outcomes, retrieved by a predictive model fine-tuned on a labeled similar experiment. First, we show that factual outcome estimation via Empirical Risk Minimization (ERM) may fail to yield valid causal inferences on the target population, even in a randomized controlled experiment and infinite training samples. Then, we propose to leverage the observed experimental settings during training to empower generalization to downstream interventional investigations, ``Causal Lifting'' the predictive model. We propose Deconfounded Empirical Risk Minimization (DERM), a new simple learning procedure minimizing the risk over a fictitious target population, preventing potential confounding effects. We validate our method on both synthetic and real-world scientific data. Notably, for the first time, we zero-shot generalize causal inferences on ISTAnt dataset (without annotation) by causal lifting a predictive model on our experiment variant.

Identifying General Mechanism Shifts in Linear Causal Representations

We consider the linear causal representation learning setting where we observe a linear mixing of $d$ unknown latent factors, which follow a linear structural causal model. Recent work has shown that it is possible to recover the latent factors as well as the underlying structural causal model over them, up to permutation and scaling, provided that we have at least $d$ environments, each of which corresponds to perfect interventions on a single latent node (factor). After this powerful result, a key open problem faced by the community has been to relax these conditions: allow for coarser than perfect single-node interventions, and allow for fewer than $d$ of them, since the number of latent factors $d$ could be very large. In this work, we consider precisely such a setting, where we allow a smaller than $d$ number of environments, and also allow for very coarse interventions that can very coarsely \textit{change the entire causal graph over the latent factors}. On the flip side, we relax what we wish to extract to simply the \textit{list of nodes that have shifted between one or more environments}. We provide a surprising identifiability result that it is indeed possible, under some very mild standard assumptions, to identify the set of shifted nodes. Our identifiability proof moreover is a constructive one: we explicitly provide necessary and sufficient conditions for a node to be a shifted node, and show that we can check these conditions given observed data. Our algorithm lends itself very naturally to the sample setting where instead of just interventional distributions, we are provided datasets of samples from each of these distributions. We corroborate our results on both synthetic experiments as well as an interesting psychometric dataset. The code can be found at https://github.com/TianyuCodings/iLCS.

ResiDual Transformer Alignment with Spectral Decomposition

When examined through the lens of their residual streams, a puzzling property emerges in transformer networks: residual contributions (e.g., attention heads) sometimes specialize in specific tasks or input attributes. In this paper, we analyze this phenomenon in vision transformers, focusing on the spectral geometry of residuals, and explore its implications for modality alignment in vision-language models. First, we link it to the intrinsically low-dimensional structure of visual head representations, zooming into their principal components and showing that they encode specialized roles across a wide variety of input data distributions. Then, we analyze the effect of head specialization in multimodal models, focusing on how improved alignment between text and specialized heads impacts zero-shot classification performance. This specialization-performance link consistently holds across diverse pre-training data, network sizes, and objectives, demonstrating a powerful new mechanism for boosting zero-shot classification through targeted alignment. Ultimately, we translate these insights into actionable terms by introducing ResiDual, a technique for spectral alignment of the residual stream. Much like panning for gold, it lets the noise from irrelevant unit principal components (i.e., attributes) wash away to amplify task-relevant ones. Remarkably, this dual perspective on modality alignment yields fine-tuning level performances on different data distributions while modeling an extremely interpretable and parameter-efficient transformation, as we extensively show on more than 50 (pre-trained network, dataset) pairs.

Scalable Mechanistic Neural Networks

We propose Scalable Mechanistic Neural Network (S-MNN), an enhanced neural network framework designed for scientific machine learning applications involving long temporal sequences. By reformulating the original Mechanistic Neural Network (MNN) (Pervez et al., 2024), we reduce the computational time and space complexities from cubic and quadratic with respect to the sequence length, respectively, to linear. This significant improvement enables efficient modeling of long-term dynamics without sacrificing accuracy or interpretability. Extensive experiments demonstrate that S-MNN matches the original MNN in precision while substantially reducing computational resources. Consequently, S-MNN can drop-in replace the original MNN in applications, providing a practical and efficient tool for integrating mechanistic bottlenecks into neural network models of complex dynamical systems.

Look Around and Find Out: OOD Detection with Relative Angles

Deep learning systems deployed in real-world applications often encounter data that is different from their in-distribution (ID). A reliable system should ideally abstain from making decisions in this out-of-distribution (OOD) setting. Existing state-of-the-art methods primarily focus on feature distances, such as k-th nearest neighbors and distances to decision boundaries, either overlooking or ineffectively using in-distribution statistics. In this work, we propose a novel angle-based metric for OOD detection that is computed relative to the in-distribution structure. We demonstrate that the angles between feature representations and decision boundaries, viewed from the mean of in-distribution features, serve as an effective discriminative factor between ID and OOD data. Our method achieves state-of-the-art performance on CIFAR-10 and ImageNet benchmarks, reducing FPR95 by 0.88% and 7.74% respectively. Our score function is compatible with existing feature space regularization techniques, enhancing performance. Additionally, its scale-invariance property enables creating an ensemble of models for OOD detection via simple score summation.

Adjusting Pretrained Backbones for Performativity

With the widespread deployment of deep learning models, they influence their environment in various ways. The induced distribution shifts can lead to unexpected performance degradation in deployed models. Existing methods to anticipate performativity typically incorporate information about the deployed model into the feature vector when predicting future outcomes. While enjoying appealing theoretical properties, modifying the input dimension of the prediction task is often not practical. To address this, we propose a novel technique to adjust pretrained backbones for performativity in a modular way, achieving better sample efficiency and enabling the reuse of existing deep learning assets. Focusing on performative label shift, the key idea is to train a shallow adapter module to perform a Bayes-optimal label shift correction to the backbone's logits given a sufficient statistic of the model to be deployed. As such, our framework decouples the construction of input-specific feature embeddings from the mechanism governing performativity. Motivated by dynamic benchmarking as a use-case, we evaluate our approach under adversarial sampling, for vision and language tasks. We show how it leads to smaller loss along the retraining trajectory and enables us to effectively select among candidate models to anticipate performance degradations. More broadly, our work provides a first baseline for addressing performativity in deep learning.

Unifying Causal Representation Learning with the Invariance Principle

Causal representation learning aims at recovering latent causal variables from high-dimensional observations to solve causal downstream tasks, such as predicting the effect of new interventions or more robust classification. A plethora of methods have been developed, each tackling carefully crafted problem settings that lead to different types of identifiability. The folklore is that these different settings are important, as they are often linked to different rungs of Pearl's causal hierarchy, although not all neatly fit. Our main contribution is to show that many existing causal representation learning approaches methodologically align the representation to known data symmetries. Identification of the variables is guided by equivalence classes across different data pockets that are not necessarily causal. This result suggests important implications, allowing us to unify many existing approaches in a single method that can mix and match different assumptions, including non-causal ones, based on the invariances relevant to our application. It also significantly benefits applicability, which we demonstrate by improving treatment effect estimation on real-world high-dimensional ecological data. Overall, this paper clarifies the role of causality assumptions in the discovery of causal variables and shifts the focus to preserving data symmetries.