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Bertrand Thirion

Inria, Université-Paris Saclay, Saclay, France

Label scarcity in biomedicine: Data-rich latent factor discovery enhances phenotype prediction


Oct 12, 2021
Marc-Andre Schulz, Bertrand Thirion, Alexandre Gramfort, Gaël Varoquaux, Danilo Bzdok

* Accepted at NIPS 2017 Workshop on Machine Learning for Health 

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Functional Magnetic Resonance Imaging data augmentation through conditional ICA


Jul 14, 2021
Badr Tajini, Hugo Richard, Bertrand Thirion

* 14 pages, 5 figures, 7 tables 

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Spatially relaxed inference on high-dimensional linear models


Jun 04, 2021
Jérôme-Alexis Chevalier, Tuan-Binh Nguyen, Bertrand Thirion, Joseph Salmon


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Adaptive Multi-View ICA: Estimation of noise levels for optimal inference


Feb 22, 2021
Hugo Richard, Pierre Ablin, Aapo Hyvärinen, Alexandre Gramfort, Bertrand Thirion


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Statistical control for spatio-temporal MEG/EEG source imaging with desparsified multi-task Lasso


Sep 29, 2020
Jérôme-Alexis Chevalier, Alexandre Gramfort, Joseph Salmon, Bertrand Thirion

* 21 pages 

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Modeling Shared Responses in Neuroimaging Studies through MultiView ICA


Jun 12, 2020
Hugo Richard, Luigi Gresele, Aapo Hyvärinen, Bertrand Thirion, Alexandre Gramfort, Pierre Ablin


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Fine-grain atlases of functional modes for fMRI analysis


Mar 05, 2020
Kamalaker Dadi, Gaël Varoquaux, Antonia Machlouzarides-Shalit, Krzysztof J. Gorgolewski, Demian Wassermann, Bertrand Thirion, Arthur Mensch


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Aggregation of Multiple Knockoffs


Feb 21, 2020
Binh T. Nguyen, Jérôme-Alexis Chevalier, Bertrand Thirion, Sylvain Arlot

* Under review 

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NeuroQuery: comprehensive meta-analysis of human brain mapping


Feb 21, 2020
Jérôme Dockès, Russell Poldrack, Romain Primet, Hande Gözükan, Tal Yarkoni, Fabian Suchanek, Bertrand Thirion, Gaël Varoquaux


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Multi-subject MEG/EEG source imaging with sparse multi-task regression


Oct 14, 2019
Hicham Janati, Thomas Bazeille, Bertrand Thirion, Marco Cuturi, Alexandre Gramfort

* version 2. arXiv admin note: text overlap with arXiv:1902.04812 

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Fast shared response model for fMRI data


Sep 27, 2019
Hugo Richard, Lucas Martin, Ana Luısa Pinho, Jonathan Pillow, Bertrand Thirion


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Group level MEG/EEG source imaging via optimal transport: minimum Wasserstein estimates


Feb 13, 2019
Hicham Janati, Thomas Bazeille, Bertrand Thirion, Marco Cuturi, Alexandre Gramfort


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Extracting Universal Representations of Cognition across Brain-Imaging Studies


Oct 19, 2018
Arthur Mensch, Julien Mairal, Bertrand Thirion, Gaël Varoquaux


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Approximate message-passing for convex optimization with non-separable penalties


Sep 17, 2018
Andre Manoel, Florent Krzakala, Gaël Varoquaux, Bertrand Thirion, Lenka Zdeborová

* 18 pages, 6 figures 

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Optimizing deep video representation to match brain activity


Sep 07, 2018
Hugo Richard, Ana Pinho, Bertrand Thirion, Guillaume Charpiat

* 2018 Conference on Cognitive Computational Neuroscience, Sep 2018, Philadelphia, United States 

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Using Feature Grouping as a Stochastic Regularizer for High-Dimensional Noisy Data


Jul 31, 2018
Sergul Aydore, Bertrand Thirion, Olivier Grisel, Gael Varoquaux

* 12 pages, 14 figures 

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Text to brain: predicting the spatial distribution of neuroimaging observations from text reports


Jun 28, 2018
Jérôme Dockès, Demian Wassermann, Russell Poldrack, Fabian Suchanek, Bertrand Thirion, Gaël Varoquaux

* MICCAI 2018 - 21st International Conference on Medical Image Computing and Computer Assisted Intervention, Sep 2018, Granada, Spain. pp.1-18, 2018 

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Scikit-learn: Machine Learning in Python


Jun 05, 2018
Fabian Pedregosa, Gaël Varoquaux, Alexandre Gramfort, Vincent Michel, Bertrand Thirion, Olivier Grisel, Mathieu Blondel, Andreas Müller, Joel Nothman, Gilles Louppe, Peter Prettenhofer, Ron Weiss, Vincent Dubourg, Jake Vanderplas, Alexandre Passos, David Cournapeau, Matthieu Brucher, Matthieu Perrot, Édouard Duchesnay

* Journal of Machine Learning Research (2011) 
* Update authors list and URLs 

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Recursive nearest agglomeration (ReNA): fast clustering for approximation of structured signals


Mar 19, 2018
Andrés Hoyos-Idrobo, Gaël Varoquaux, Jonas Kahn, Bertrand Thirion

* IEEE Transactions on Pattern Analysis and Machine Intelligence, Institute of Electrical and Electronics Engineers, In press 

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Learning Neural Representations of Human Cognition across Many fMRI Studies


Nov 11, 2017
Arthur Mensch, Julien Mairal, Danilo Bzdok, Bertrand Thirion, Gaël Varoquaux

* Advances in Neural Information Processing Systems, Dec 2017, Long Beach, United States. 2017 

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Stochastic Subsampling for Factorizing Huge Matrices


Oct 30, 2017
Arthur Mensch, Julien Mairal, Bertrand Thirion, Gael Varoquaux

* IEEE Transactions on Signal Processing, 2018, 66 (1), pp 113-128 
* IEEE Transactions on Signal Processing, Institute of Electrical and Electronics Engineers, A Para\^itre 

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Subsampled online matrix factorization with convergence guarantees


Nov 30, 2016
Arthur Mensch, Julien Mairal, Gaël Varoquaux, Bertrand Thirion

* 9th NIPS Workshop on Optimization for Machine Learning, Dec 2016, Barcelone, Spain 

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Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example


Nov 18, 2016
Alexandre Abraham, Michael Milham, Adriana Di Martino, R. Cameron Craddock, Dimitris Samaras, Bertrand Thirion, Gaël Varoquaux

* in NeuroImage, Elsevier, 2016 

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Assessing and tuning brain decoders: cross-validation, caveats, and guidelines


Nov 07, 2016
Gaël Varoquaux, Pradeep Reddy Raamana, Denis Engemann, Andrés Hoyos-Idrobo, Yannick Schwartz, Bertrand Thirion

* NeuroImage, Elsevier, 2016 

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Social-sparsity brain decoders: faster spatial sparsity


Jun 21, 2016
Gaël Varoquaux, Matthieu Kowalski, Bertrand Thirion

* in Pattern Recognition in NeuroImaging, Jun 2016, Trento, Italy. 2016 

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Dictionary Learning for Massive Matrix Factorization


May 26, 2016
Arthur Mensch, Julien Mairal, Bertrand Thirion, Gaël Varoquaux

* Proceedings of the International Conference on Machine Learning, 2016, pp 1737-1746 

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Compressed Online Dictionary Learning for Fast fMRI Decomposition


Feb 08, 2016
Arthur Mensch, Gaël Varoquaux, Bertrand Thirion


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Fast clustering for scalable statistical analysis on structured images


Nov 16, 2015
Bertrand Thirion, Andrés Hoyos-Idrobo, Jonas Kahn, Gael Varoquaux

* ICML Workshop on Statistics, Machine Learning and Neuroscience (Stamlins 2015), Jul 2015, Lille, France 

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