Arboretum: A Large Multimodal Dataset Enabling AI for Biodiversity

We introduce Arboretum, the largest publicly accessible dataset designed to advance AI for biodiversity applications. This dataset, curated from the iNaturalist community science platform and vetted by domain experts to ensure accuracy, includes 134.6 million images, surpassing existing datasets in scale by an order of magnitude. The dataset encompasses image-language paired data for a diverse set of species from birds (Aves), spiders/ticks/mites (Arachnida), insects (Insecta), plants (Plantae), fungus/mushrooms (Fungi), snails (Mollusca), and snakes/lizards (Reptilia), making it a valuable resource for multimodal vision-language AI models for biodiversity assessment and agriculture research. Each image is annotated with scientific names, taxonomic details, and common names, enhancing the robustness of AI model training. We showcase the value of Arboretum by releasing a suite of CLIP models trained using a subset of 40 million captioned images. We introduce several new benchmarks for rigorous assessment, report accuracy for zero-shot learning, and evaluations across life stages, rare species, confounding species, and various levels of the taxonomic hierarchy. We anticipate that Arboretum will spur the development of AI models that can enable a variety of digital tools ranging from pest control strategies, crop monitoring, and worldwide biodiversity assessment and environmental conservation. These advancements are critical for ensuring food security, preserving ecosystems, and mitigating the impacts of climate change. Arboretum is publicly available, easily accessible, and ready for immediate use. Please see the \href{https://baskargroup.github.io/Arboretum/}{project website} for links to our data, models, and code.

TuneTables: Context Optimization for Scalable Prior-Data Fitted Networks

While tabular classification has traditionally relied on from-scratch training, a recent breakthrough called prior-data fitted networks (PFNs) challenges this approach. Similar to large language models, PFNs make use of pretraining and in-context learning to achieve strong performance on new tasks in a single forward pass. However, current PFNs have limitations that prohibit their widespread adoption. Notably, TabPFN achieves very strong performance on small tabular datasets but is not designed to make predictions for datasets of size larger than 1000. In this work, we overcome these limitations and substantially improve the performance of PFNs by developing context optimization techniques for PFNs. Specifically, we propose TuneTables, a novel prompt-tuning strategy that compresses large datasets into a smaller learned context. TuneTables scales TabPFN to be competitive with state-of-the-art tabular classification methods on larger datasets, while having a substantially lower inference time than TabPFN. Furthermore, we show that TuneTables can be used as an interpretability tool and can even be used to mitigate biases by optimizing a fairness objective.

Scaling TabPFN: Sketching and Feature Selection for Tabular Prior-Data Fitted Networks

Tabular classification has traditionally relied on supervised algorithms, which estimate the parameters of a prediction model using its training data. Recently, Prior-Data Fitted Networks (PFNs) such as TabPFN have successfully learned to classify tabular data in-context: the model parameters are designed to classify new samples based on labelled training samples given after the model training. While such models show great promise, their applicability to real-world data remains limited due to the computational scale needed. Here we study the following question: given a pre-trained PFN for tabular data, what is the best way to summarize the labelled training samples before feeding them to the model? We conduct an initial investigation of sketching and feature-selection methods for TabPFN, and note certain key differences between it and conventionally fitted tabular models.

Exploring Dataset-Scale Indicators of Data Quality

Modern computer vision foundation models are trained on massive amounts of data, incurring large economic and environmental costs. Recent research has suggested that improving data quality can significantly reduce the need for data quantity. But what constitutes data quality in computer vision? We posit that the quality of a given dataset can be decomposed into distinct sample-level and dataset-level constituents, and that the former have been more extensively studied than the latter. We ablate the effects of two important dataset-level constituents: label set design, and class balance. By monitoring these constituents using key indicators we provide, researchers and practitioners can better anticipate model performance, measured in terms of its accuracy and robustness to distribution shifts.

ArcheType: A Novel Framework for Open-Source Column Type Annotation using Large Language Models

Existing deep-learning approaches to semantic column type annotation (CTA) have important shortcomings: they rely on semantic types which are fixed at training time; require a large number of training samples per type and incur large run-time inference costs; and their performance can degrade when evaluated on novel datasets, even when types remain constant. Large language models have exhibited strong zero-shot classification performance on a wide range of tasks and in this paper we explore their use for CTA. We introduce ArcheType, a simple, practical method for context sampling, prompt serialization, model querying, and label remapping, which enables large language models to solve CTA problems in a fully zero-shot manner. We ablate each component of our method separately, and establish that improvements to context sampling and label remapping provide the most consistent gains. ArcheType establishes a new state-of-the-art performance on zero-shot CTA benchmarks (including three new domain-specific benchmarks which we release along with this paper), and when used in conjunction with classical CTA techniques, it outperforms a SOTA DoDuo model on the fine-tuned SOTAB benchmark. Our code is available at https://github.com/penfever/ArcheType.

Distributionally Robust Classification on a Data Budget

Real world uses of deep learning require predictable model behavior under distribution shifts. Models such as CLIP show emergent natural distributional robustness comparable to humans, but may require hundreds of millions of training samples. Can we train robust learners in a domain where data is limited? To rigorously address this question, we introduce JANuS (Joint Annotations and Names Set), a collection of four new training datasets with images, labels, and corresponding captions, and perform a series of carefully controlled investigations of factors contributing to robustness in image classification, then compare those results to findings derived from a large-scale meta-analysis. Using this approach, we show that standard ResNet-50 trained with the cross-entropy loss on 2.4 million image samples can attain comparable robustness to a CLIP ResNet-50 trained on 400 million samples. To our knowledge, this is the first result showing (near) state-of-the-art distributional robustness on limited data budgets. Our dataset is available at \url{https://huggingface.co/datasets/penfever/JANuS_dataset}, and the code used to reproduce our experiments can be found at \url{https://github.com/penfever/vlhub/}.

LiT Tuned Models for Efficient Species Detection

Recent advances in training vision-language models have demonstrated unprecedented robustness and transfer learning effectiveness; however, standard computer vision datasets are image-only, and therefore not well adapted to such training methods. Our paper introduces a simple methodology for adapting any fine-grained image classification dataset for distributed vision-language pretraining. We implement this methodology on the challenging iNaturalist-2021 dataset, comprised of approximately 2.7 million images of macro-organisms across 10,000 classes, and achieve a new state-of-the art model in terms of zero-shot classification accuracy. Somewhat surprisingly, our model (trained using a new method called locked-image text tuning) uses a pre-trained, frozen vision representation, proving that language alignment alone can attain strong transfer learning performance, even on fractious, long-tailed datasets. Our approach opens the door for utilizing high quality vision-language pretrained models in agriculturally relevant applications involving species detection.

Caption supervision enables robust learners

Vision language models like CLIP are robust to natural distribution shifts, in part because CLIP learns on unstructured data using a technique called caption supervision; the model inteprets image-linked texts as ground-truth labels. In a carefully controlled comparison study, we show that CNNs trained on a standard cross-entropy loss can also benefit from caption supervision, in some cases even more than VL models, on the same data. To facilitate future experiments with high-accuracy caption-supervised models, we introduce CaptionNet (https://github.com/penfever/CaptionNet/), which includes a class-balanced, fully supervised dataset with over 50,000 new human-labeled ImageNet-compliant samples which includes web-scraped captions. In a series of experiments on CaptionNet, we show how the choice of loss function, data filtration and supervision strategy enable robust computer vision. We also provide the codebase necessary to reproduce our experiments at https://github.com/penfever/vlhub/

A Meta-Analysis of Distributionally-Robust Models

State-of-the-art image classifiers trained on massive datasets (such as ImageNet) have been shown to be vulnerable to a range of both intentional and incidental distribution shifts. On the other hand, several recent classifiers with favorable out-of-distribution (OOD) robustness properties have emerged, achieving high accuracy on their target tasks while maintaining their in-distribution accuracy on challenging benchmarks. We present a meta-analysis on a wide range of publicly released models, most of which have been published over the last twelve months. Through this meta-analysis, we empirically identify four main commonalities for all the best-performing OOD-robust models, all of which illuminate the considerable promise of vision-language pre-training.