Data-driven Modeling in Metrology -- A Short Introduction, Current Developments and Future Perspectives

Mathematical models are vital to the field of metrology, playing a key role in the derivation of measurement results and the calculation of uncertainties from measurement data, informed by an understanding of the measurement process. These models generally represent the correlation between the quantity being measured and all other pertinent quantities. Such relationships are used to construct measurement systems that can interpret measurement data to generate conclusions and predictions about the measurement system itself. Classic models are typically analytical, built on fundamental physical principles. However, the rise of digital technology, expansive sensor networks, and high-performance computing hardware have led to a growing shift towards data-driven methodologies. This trend is especially prominent when dealing with large, intricate networked sensor systems in situations where there is limited expert understanding of the frequently changing real-world contexts. Here, we demonstrate the variety of opportunities that data-driven modeling presents, and how they have been already implemented in various real-world applications.

Review of Zero-Shot and Few-Shot AI Algorithms in The Medical Domain

In this paper, different techniques of few-shot, zero-shot, and regular object detection have been investigated. The need for few-shot learning and zero-shot learning techniques is crucial and arises from the limitations and challenges in traditional machine learning, deep learning, and computer vision methods where they require large amounts of data, plus the poor generalization of those traditional methods. Those techniques can give us prominent results by using only a few training sets reducing the required amounts of data and improving the generalization. This survey will highlight the recent papers of the last three years that introduce the usage of few-shot learning and zero-shot learning techniques in addressing the challenges mentioned earlier. In this paper we reviewed the Zero-shot, few-shot and regular object detection methods and categorized them in an understandable manner. Based on the comparison made within each category. It been found that the approaches are quite impressive. This integrated review of diverse papers on few-shot, zero-shot, and regular object detection reveals a shared focus on advancing the field through novel frameworks and techniques. A noteworthy observation is the scarcity of detailed discussions regarding the difficulties encountered during the development phase. Contributions include the introduction of innovative models, such as ZSD-YOLO and GTNet, often showcasing improvements with various metrics such as mean average precision (mAP),Recall@100 (RE@100), the area under the receiver operating characteristic curve (AUROC) and precision. These findings underscore a collective move towards leveraging vision-language models for versatile applications, with potential areas for future research including a more thorough exploration of limitations and domain-specific adaptations.

Towards Intelligent Speech Assistants in Operating Rooms: A Multimodal Model for Surgical Workflow Analysis

To develop intelligent speech assistants and integrate them seamlessly with intra-operative decision-support frameworks, accurate and efficient surgical phase recognition is a prerequisite. In this study, we propose a multimodal framework based on Gated Multimodal Units (GMU) and Multi-Stage Temporal Convolutional Networks (MS-TCN) to recognize surgical phases of port-catheter placement operations. Our method merges speech and image models and uses them separately in different surgical phases. Based on the evaluation of 28 operations, we report a frame-wise accuracy of 92.65 $\pm$ 3.52% and an F1-score of 92.30 $\pm$ 3.82%. Our results show approximately 10% improvement in both metrics over previous work and validate the effectiveness of integrating multimodal data for the surgical phase recognition task. We further investigate the contribution of individual data channels by comparing mono-modal models with multimodal models.

Attri-Net: A Globally and Locally Inherently Interpretable Model for Multi-Label Classification Using Class-Specific Counterfactuals

Interpretability is crucial for machine learning algorithms in high-stakes medical applications. However, high-performing neural networks typically cannot explain their predictions. Post-hoc explanation methods provide a way to understand neural networks but have been shown to suffer from conceptual problems. Moreover, current research largely focuses on providing local explanations for individual samples rather than global explanations for the model itself. In this paper, we propose Attri-Net, an inherently interpretable model for multi-label classification that provides local and global explanations. Attri-Net first counterfactually generates class-specific attribution maps to highlight the disease evidence, then performs classification with logistic regression classifiers based solely on the attribution maps. Local explanations for each prediction can be obtained by interpreting the attribution maps weighted by the classifiers' weights. Global explanation of whole model can be obtained by jointly considering learned average representations of the attribution maps for each class (called the class centers) and the weights of the linear classifiers. To ensure the model is ``right for the right reason", we further introduce a mechanism to guide the model's explanations to align with human knowledge. Our comprehensive evaluations show that Attri-Net can generate high-quality explanations consistent with clinical knowledge while not sacrificing classification performance.

On the Influence of Smoothness Constraints in Computed Tomography Motion Compensation

Computed tomography (CT) relies on precise patient immobilization during image acquisition. Nevertheless, motion artifacts in the reconstructed images can persist. Motion compensation methods aim to correct such artifacts post-acquisition, often incorporating temporal smoothness constraints on the estimated motion patterns. This study analyzes the influence of a spline-based motion model within an existing rigid motion compensation algorithm for cone-beam CT on the recoverable motion frequencies. Results demonstrate that the choice of motion model crucially influences recoverable frequencies. The optimization-based motion compensation algorithm is able to accurately fit the spline nodes for frequencies almost up to the node-dependent theoretical limit according to the Nyquist-Shannon theorem. Notably, a higher node count does not compromise reconstruction performance for slow motion patterns, but can extend the range of recoverable high frequencies for the investigated algorithm. Eventually, the optimal motion model is dependent on the imaged anatomy, clinical use case, and scanning protocol and should be tailored carefully to the expected motion frequency spectrum to ensure accurate motion compensation.

SNOBERT: A Benchmark for clinical notes entity linking in the SNOMED CT clinical terminology

The extraction and analysis of insights from medical data, primarily stored in free-text formats by healthcare workers, presents significant challenges due to its unstructured nature. Medical coding, a crucial process in healthcare, remains minimally automated due to the complexity of medical ontologies and restricted access to medical texts for training Natural Language Processing models. In this paper, we proposed a method, "SNOBERT," of linking text spans in clinical notes to specific concepts in the SNOMED CT using BERT-based models. The method consists of two stages: candidate selection and candidate matching. The models were trained on one of the largest publicly available dataset of labeled clinical notes. SNOBERT outperforms other classical methods based on deep learning, as confirmed by the results of a challenge in which it was applied.

Application of Gated Recurrent Units for CT Trajectory Optimization

Recent advances in computed tomography (CT) imaging, especially with dual-robot systems, have introduced new challenges for scan trajectory optimization. This paper presents a novel approach using Gated Recurrent Units (GRUs) to optimize CT scan trajectories. Our approach exploits the flexibility of robotic CT systems to select projections that enhance image quality by improving resolution and contrast while reducing scan time. We focus on cone-beam CT and employ several projection-based metrics, including absorption, pixel intensities, contrast-to-noise ratio, and data completeness. The GRU network aims to minimize data redundancy and maximize completeness with a limited number of projections. We validate our method using simulated data of a test specimen, focusing on a specific voxel of interest. The results show that the GRU-optimized scan trajectories can outperform traditional circular CT trajectories in terms of image quality metrics. For the used specimen, SSIM improves from 0.38 to 0.49 and CNR increases from 6.97 to 9.08. This finding suggests that the application of GRU in CT scan trajectory optimization can lead to more efficient, cost-effective, and high-quality imaging solutions.

Analyzing Narrative Processing in Large Language Models (LLMs): Using GPT4 to test BERT

The ability to transmit and receive complex information via language is unique to humans and is the basis of traditions, culture and versatile social interactions. Through the disruptive introduction of transformer based large language models (LLMs) humans are not the only entity to "understand" and produce language any more. In the present study, we have performed the first steps to use LLMs as a model to understand fundamental mechanisms of language processing in neural networks, in order to make predictions and generate hypotheses on how the human brain does language processing. Thus, we have used ChatGPT to generate seven different stylistic variations of ten different narratives (Aesop's fables). We used these stories as input for the open source LLM BERT and have analyzed the activation patterns of the hidden units of BERT using multi-dimensional scaling and cluster analysis. We found that the activation vectors of the hidden units cluster according to stylistic variations in earlier layers of BERT (1) than narrative content (4-5). Despite the fact that BERT consists of 12 identical building blocks that are stacked and trained on large text corpora, the different layers perform different tasks. This is a very useful model of the human brain, where self-similar structures, i.e. different areas of the cerebral cortex, can have different functions and are therefore well suited to processing language in a very efficient way. The proposed approach has the potential to open the black box of LLMs on the one hand, and might be a further step to unravel the neural processes underlying human language processing and cognition in general.

Self-Supervised Learning for Interventional Image Analytics: Towards Robust Device Trackers

An accurate detection and tracking of devices such as guiding catheters in live X-ray image acquisitions is an essential prerequisite for endovascular cardiac interventions. This information is leveraged for procedural guidance, e.g., directing stent placements. To ensure procedural safety and efficacy, there is a need for high robustness no failures during tracking. To achieve that, one needs to efficiently tackle challenges, such as: device obscuration by contrast agent or other external devices or wires, changes in field-of-view or acquisition angle, as well as the continuous movement due to cardiac and respiratory motion. To overcome the aforementioned challenges, we propose a novel approach to learn spatio-temporal features from a very large data cohort of over 16 million interventional X-ray frames using self-supervision for image sequence data. Our approach is based on a masked image modeling technique that leverages frame interpolation based reconstruction to learn fine inter-frame temporal correspondences. The features encoded in the resulting model are fine-tuned downstream. Our approach achieves state-of-the-art performance and in particular robustness compared to ultra optimized reference solutions (that use multi-stage feature fusion, multi-task and flow regularization). The experiments show that our method achieves 66.31% reduction in maximum tracking error against reference solutions (23.20% when flow regularization is used); achieving a success score of 97.95% at a 3x faster inference speed of 42 frames-per-second (on GPU). The results encourage the use of our approach in various other tasks within interventional image analytics that require effective understanding of spatio-temporal semantics.

Differentiable Score-Based Likelihoods: Learning CT Motion Compensation From Clean Images

Motion artifacts can compromise the diagnostic value of computed tomography (CT) images. Motion correction approaches require a per-scan estimation of patient-specific motion patterns. In this work, we train a score-based model to act as a probability density estimator for clean head CT images. Given the trained model, we quantify the deviation of a given motion-affected CT image from the ideal distribution through likelihood computation. We demonstrate that the likelihood can be utilized as a surrogate metric for motion artifact severity in the CT image facilitating the application of an iterative, gradient-based motion compensation algorithm. By optimizing the underlying motion parameters to maximize likelihood, our method effectively reduces motion artifacts, bringing the image closer to the distribution of motion-free scans. Our approach achieves comparable performance to state-of-the-art methods while eliminating the need for a representative data set of motion-affected samples. This is particularly advantageous in real-world applications, where patient motion patterns may exhibit unforeseen variability, ensuring robustness without implicit assumptions about recoverable motion types.