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Abhinav K. Jha

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Observer study-based evaluation of TGAN architecture used to generate oncological PET images

Nov 28, 2023
Roberto Fedrigo, Fereshteh Yousefirizi, Ziping Liu, Abhinav K. Jha, Robert V. Bergen, Jean-Francois Rajotte, Raymond T. Ng, Ingrid Bloise, Sara Harsini, Dan J. Kadrmas, Carlos Uribe, Arman Rahmim

The application of computer-vision algorithms in medical imaging has increased rapidly in recent years. However, algorithm training is challenging due to limited sample sizes, lack of labeled samples, as well as privacy concerns regarding data sharing. To address these issues, we previously developed (Bergen et al. 2022) a synthetic PET dataset for Head and Neck (H and N) cancer using the temporal generative adversarial network (TGAN) architecture and evaluated its performance segmenting lesions and identifying radiomics features in synthesized images. In this work, a two-alternative forced-choice (2AFC) observer study was performed to quantitatively evaluate the ability of human observers to distinguish between real and synthesized oncological PET images. In the study eight trained readers, including two board-certified nuclear medicine physicians, read 170 real/synthetic image pairs presented as 2D-transaxial using a dedicated web app. For each image pair, the observer was asked to identify the real image and input their confidence level with a 5-point Likert scale. P-values were computed using the binomial test and Wilcoxon signed-rank test. A heat map was used to compare the response accuracy distribution for the signed-rank test. Response accuracy for all observers ranged from 36.2% [27.9-44.4] to 63.1% [54.8-71.3]. Six out of eight observers did not identify the real image with statistical significance, indicating that the synthetic dataset was reasonably representative of oncological PET images. Overall, this study adds validity to the realism of our simulated H&N cancer dataset, which may be implemented in the future to train AI algorithms while favoring patient confidentiality and privacy protection.

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DEMIST: A deep-learning-based task-specific denoising approach for myocardial perfusion SPECT

Jun 14, 2023
Md Ashequr Rahman, Zitong Yu, Richard Laforest, Craig K. Abbey, Barry A. Siegel, Abhinav K. Jha

Figure 1 for DEMIST: A deep-learning-based task-specific denoising approach for myocardial perfusion SPECT
Figure 2 for DEMIST: A deep-learning-based task-specific denoising approach for myocardial perfusion SPECT
Figure 3 for DEMIST: A deep-learning-based task-specific denoising approach for myocardial perfusion SPECT
Figure 4 for DEMIST: A deep-learning-based task-specific denoising approach for myocardial perfusion SPECT

There is an important need for methods to process myocardial perfusion imaging (MPI) SPECT images acquired at lower radiation dose and/or acquisition time such that the processed images improve observer performance on the clinical task of detecting perfusion defects. To address this need, we build upon concepts from model-observer theory and our understanding of the human visual system to propose a Detection task-specific deep-learning-based approach for denoising MPI SPECT images (DEMIST). The approach, while performing denoising, is designed to preserve features that influence observer performance on detection tasks. We objectively evaluated DEMIST on the task of detecting perfusion defects using a retrospective study with anonymized clinical data in patients who underwent MPI studies across two scanners (N = 338). The evaluation was performed at low-dose levels of 6.25%, 12.5% and 25% and using an anthropomorphic channelized Hotelling observer. Performance was quantified using area under the receiver operating characteristics curve (AUC). Images denoised with DEMIST yielded significantly higher AUC compared to corresponding low-dose images and images denoised with a commonly used task-agnostic DL-based denoising method. Similar results were observed with stratified analysis based on patient sex and defect type. Additionally, DEMIST improved visual fidelity of the low-dose images as quantified using root mean squared error and structural similarity index metric. A mathematical analysis revealed that DEMIST preserved features that assist in detection tasks while improving the noise properties, resulting in improved observer performance. The results provide strong evidence for further clinical evaluation of DEMIST to denoise low-count images in MPI SPECT.

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A quality assurance framework for real-time monitoring of deep learning segmentation models in radiotherapy

May 19, 2023
Xiyao Jin, Yao Hao, Jessica Hilliard, Zhehao Zhang, Maria A. Thomas, Hua Li, Abhinav K. Jha, Geoffrey D. Hugo

Figure 1 for A quality assurance framework for real-time monitoring of deep learning segmentation models in radiotherapy
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To safely deploy deep learning models in the clinic, a quality assurance framework is needed for routine or continuous monitoring of input-domain shift and the models' performance without ground truth contours. In this work, cardiac substructure segmentation was used as an example task to establish a QA framework. A benchmark dataset consisting of Computed Tomography (CT) images along with manual cardiac delineations of 241 patients were collected, including one 'common' image domain and five 'uncommon' domains. Segmentation models were tested on the benchmark dataset for an initial evaluation of model capacity and limitations. An image domain shift detector was developed by utilizing a trained Denoising autoencoder (DAE) and two hand-engineered features. Another Variational Autoencoder (VAE) was also trained to estimate the shape quality of the auto-segmentation results. Using the extracted features from the image/segmentation pair as inputs, a regression model was trained to predict the per-patient segmentation accuracy, measured by Dice coefficient similarity (DSC). The framework was tested across 19 segmentation models to evaluate the generalizability of the entire framework. As results, the predicted DSC of regression models achieved a mean absolute error (MAE) ranging from 0.036 to 0.046 with an averaged MAE of 0.041. When tested on the benchmark dataset, the performances of all segmentation models were not significantly affected by scanning parameters: FOV, slice thickness and reconstructions kernels. For input images with Poisson noise, CNN-based segmentation models demonstrated a decreased DSC ranging from 0.07 to 0.41, while the transformer-based model was not significantly affected.

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Development and task-based evaluation of a scatter-window projection and deep learning-based transmission-less attenuation compensation method for myocardial perfusion SPECT

Mar 19, 2023
Zitong Yu, Md Ashequr Rahman, Craig K. Abbey, Barry A. Siegel, Abhinav K. Jha

Figure 1 for Development and task-based evaluation of a scatter-window projection and deep learning-based transmission-less attenuation compensation method for myocardial perfusion SPECT
Figure 2 for Development and task-based evaluation of a scatter-window projection and deep learning-based transmission-less attenuation compensation method for myocardial perfusion SPECT
Figure 3 for Development and task-based evaluation of a scatter-window projection and deep learning-based transmission-less attenuation compensation method for myocardial perfusion SPECT
Figure 4 for Development and task-based evaluation of a scatter-window projection and deep learning-based transmission-less attenuation compensation method for myocardial perfusion SPECT

Attenuation compensation (AC) is beneficial for visual interpretation tasks in single-photon emission computed tomography (SPECT) myocardial perfusion imaging (MPI). However, traditional AC methods require the availability of a transmission scan, most often a CT scan. This approach has the disadvantages of increased radiation dose, increased scanner cost, and the possibility of inaccurate diagnosis in cases of misregistration between the SPECT and CT images. Further, many SPECT systems do not include a CT component. To address these issues, we developed a Scatter-window projection and deep Learning-based AC (SLAC) method to perform AC without a separate transmission scan. To investigate the clinical efficacy of this method, we then objectively evaluated the performance of this method on the clinical task of detecting perfusion defects on MPI in a retrospective study with anonymized clinical SPECT/CT stress MPI images. The proposed method was compared with CT-based AC (CTAC) and no-AC (NAC) methods. Our results showed that the SLAC method yielded an almost overlapping receiver operating characteristic (ROC) plot and a similar area under the ROC (AUC) to the CTAC method on this task. These results demonstrate the capability of the SLAC method for transmission-less AC in SPECT and motivate further clinical evaluation.

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Need for Objective Task-based Evaluation of Deep Learning-Based Denoising Methods: A Study in the Context of Myocardial Perfusion SPECT

Mar 16, 2023
Zitong Yu, Md Ashequr Rahman, Richard Laforest, Thomas H. Schindler, Robert J. Gropler, Richard L. Wahl, Barry A. Siegel, Abhinav K. Jha

Figure 1 for Need for Objective Task-based Evaluation of Deep Learning-Based Denoising Methods: A Study in the Context of Myocardial Perfusion SPECT
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Figure 4 for Need for Objective Task-based Evaluation of Deep Learning-Based Denoising Methods: A Study in the Context of Myocardial Perfusion SPECT

Artificial intelligence-based methods have generated substantial interest in nuclear medicine. An area of significant interest has been using deep-learning (DL)-based approaches for denoising images acquired with lower doses, shorter acquisition times, or both. Objective evaluation of these approaches is essential for clinical application. DL-based approaches for denoising nuclear-medicine images have typically been evaluated using fidelity-based figures of merit (FoMs) such as RMSE and SSIM. However, these images are acquired for clinical tasks and thus should be evaluated based on their performance in these tasks. Our objectives were to (1) investigate whether evaluation with these FoMs is consistent with objective clinical-task-based evaluation; (2) provide a theoretical analysis for determining the impact of denoising on signal-detection tasks; (3) demonstrate the utility of virtual clinical trials (VCTs) to evaluate DL-based methods. A VCT to evaluate a DL-based method for denoising myocardial perfusion SPECT (MPS) images was conducted. The impact of DL-based denoising was evaluated using fidelity-based FoMs and AUC, which quantified performance on detecting perfusion defects in MPS images as obtained using a model observer with anthropomorphic channels. Based on fidelity-based FoMs, denoising using the considered DL-based method led to significantly superior performance. However, based on ROC analysis, denoising did not improve, and in fact, often degraded detection-task performance. The results motivate the need for objective task-based evaluation of DL-based denoising approaches. Further, this study shows how VCTs provide a mechanism to conduct such evaluations using VCTs. Finally, our theoretical treatment reveals insights into the reasons for the limited performance of the denoising approach.

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A task-specific deep-learning-based denoising approach for myocardial perfusion SPECT

Mar 01, 2023
Md Ashequr Rahman, Zitong Yu, Barry A. Siegel, Abhinav K. Jha

Figure 1 for A task-specific deep-learning-based denoising approach for myocardial perfusion SPECT
Figure 2 for A task-specific deep-learning-based denoising approach for myocardial perfusion SPECT
Figure 3 for A task-specific deep-learning-based denoising approach for myocardial perfusion SPECT
Figure 4 for A task-specific deep-learning-based denoising approach for myocardial perfusion SPECT

Deep-learning (DL)-based methods have shown significant promise in denoising myocardial perfusion SPECT images acquired at low dose. For clinical application of these methods, evaluation on clinical tasks is crucial. Typically, these methods are designed to minimize some fidelity-based criterion between the predicted denoised image and some reference normal-dose image. However, while promising, studies have shown that these methods may have limited impact on the performance of clinical tasks in SPECT. To address this issue, we use concepts from the literature on model observers and our understanding of the human visual system to propose a DL-based denoising approach designed to preserve observer-related information for detection tasks. The proposed method was objectively evaluated on the task of detecting perfusion defect in myocardial perfusion SPECT images using a retrospective study with anonymized clinical data. Our results demonstrate that the proposed method yields improved performance on this detection task compared to using low-dose images. The results show that by preserving task-specific information, DL may provide a mechanism to improve observer performance in low-dose myocardial perfusion SPECT.

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Issues and Challenges in Applications of Artificial Intelligence to Nuclear Medicine -- The Bethesda Report (AI Summit 2022)

Nov 07, 2022
Arman Rahmim, Tyler J. Bradshaw, Irène Buvat, Joyita Dutta, Abhinav K. Jha, Paul E. Kinahan, Quanzheng Li, Chi Liu, Melissa D. McCradden, Babak Saboury, Eliot Siegel, John J. Sunderland, Richard L. Wahl

Figure 1 for Issues and Challenges in Applications of Artificial Intelligence to Nuclear Medicine -- The Bethesda Report (AI Summit 2022)
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The SNMMI Artificial Intelligence (SNMMI-AI) Summit, organized by the SNMMI AI Task Force, took place in Bethesda, MD on March 21-22, 2022. It brought together various community members and stakeholders from academia, healthcare, industry, patient representatives, and government (NIH, FDA), and considered various key themes to envision and facilitate a bright future for routine, trustworthy use of AI in nuclear medicine. In what follows, essential issues, challenges, controversies and findings emphasized in the meeting are summarized.

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