From Boundaries to Semantics: Prompt-Guided Multi-Task Learning for Petrographic Thin-section Segmentation

Grain-edge segmentation (GES) and lithology semantic segmentation (LSS) are two pivotal tasks for quantifying rock fabric and composition. However, these two tasks are often treated separately, and the segmentation quality is implausible albeit expensive, time-consuming, and expert-annotated datasets have been used. Recently, foundation models, especially the Segment Anything Model (SAM), have demonstrated impressive robustness for boundary alignment. However, directly adapting SAM to joint GES and LSS is nontrivial due to 1) severe domain gap induced by extinction-dependent color variations and ultra-fine grain boundaries, and 2) lacking novel modules for joint learning on multi-angle petrographic image stacks. In this paper, we propose Petro-SAM, a novel two-stage, multi-task framework that can achieve high-quality joint GES and LSS on petrographic images. Specifically, based on SAM, we introduce a Merge Block to integrate seven polarized views, effectively solving the extinction issue. Moreover, we introduce multi-scale feature fusion and color-entropy priors to refine the detection.

An Exceptional Dataset For Rare Pancreatic Tumor Segmentation

Pancreatic NEuroendocrine Tumors (pNETs) are very rare endocrine neoplasms that account for less than 5% of all pancreatic malignancies, with an incidence of only 1-1.5 cases per 100,000. Early detection of pNETs is critical for improving patient survival, but the rarity of pNETs makes segmenting them from CT a very challenging problem. So far, there has not been a dataset specifically for pNETs available to researchers. To address this issue, we propose a pNETs dataset, a well-annotated Contrast-Enhanced Computed Tomography (CECT) dataset focused exclusively on Pancreatic Neuroendocrine Tumors, containing data from 469 patients. This is the first dataset solely dedicated to pNETs, distinguishing it from previous collections. Additionally, we provide the baseline detection networks with a new slice-wise weight loss function designed for the UNet-based model, improving the overall pNET segmentation performance. We hope that our dataset can enhance the understanding and diagnosis of pNET Tumors within the medical community, facilitate the development of more accurate diagnostic tools, and ultimately improve patient outcomes and advance the field of oncology.