ECOR: Explainable CLIP for Object Recognition

Large Vision Language Models (VLMs), such as CLIP, have significantly contributed to various computer vision tasks, including object recognition and object detection. Their open vocabulary feature enhances their value. However, their black-box nature and lack of explainability in predictions make them less trustworthy in critical domains. Recently, some work has been done to force VLMs to provide reasonable rationales for object recognition, but this often comes at the expense of classification accuracy. In this paper, we first propose a mathematical definition of explainability in the object recognition task based on the joint probability distribution of categories and rationales, then leverage this definition to fine-tune CLIP in an explainable manner. Through evaluations of different datasets, our method demonstrates state-of-the-art performance in explainable classification. Notably, it excels in zero-shot settings, showcasing its adaptability. This advancement improves explainable object recognition, enhancing trust across diverse applications. The code will be made available online upon publication.

GeneMask: Fast Pretraining of Gene Sequences to Enable Few-Shot Learning

Large-scale language models such as DNABert and LOGO aim to learn optimal gene representations and are trained on the entire Human Reference Genome. However, standard tokenization schemes involve a simple sliding window of tokens like k-mers that do not leverage any gene-based semantics and thus may lead to (trivial) masking of easily predictable sequences and subsequently inefficient Masked Language Modeling (MLM) training. Therefore, we propose a novel masking algorithm, GeneMask, for MLM training of gene sequences, where we randomly identify positions in a gene sequence as mask centers and locally select the span around the mask center with the highest Normalized Pointwise Mutual Information (NPMI) to mask. We observe that in the absence of human-understandable semantics in the genomics domain (in contrast, semantic units like words and phrases are inherently available in NLP), GeneMask-based models substantially outperform the SOTA models (DNABert and LOGO) over four benchmark gene sequence classification datasets in five few-shot settings (10 to 1000-shot). More significantly, the GeneMask-based DNABert model is trained for less than one-tenth of the number of epochs of the original SOTA model. We also observe a strong correlation between top-ranked PMI tokens and conserved DNA sequence motifs, which may indicate the incorporation of latent genomic information. The codes (including trained models) and datasets are made publicly available at https://github.com/roysoumya/GeneMask.

IVP-VAE: Modeling EHR Time Series with Initial Value Problem Solvers

Continuous-time models such as Neural ODEs and Neural Flows have shown promising results in analyzing irregularly sampled time series frequently encountered in electronic health records. Based on these models, time series are typically processed with a hybrid of an initial value problem (IVP) solver and a recurrent neural network within the variational autoencoder architecture. Sequentially solving IVPs makes such models computationally less efficient. In this paper, we propose to model time series purely with continuous processes whose state evolution can be approximated directly by IVPs. This eliminates the need for recurrent computation and enables multiple states to evolve in parallel. We further fuse the encoder and decoder with one IVP solver based on its invertibility, which leads to fewer parameters and faster convergence. Experiments on three real-world datasets show that the proposed approach achieves comparable extrapolation and classification performance while gaining more than one order of magnitude speedup over other continuous-time counterparts.

A Review of the Role of Causality in Developing Trustworthy AI Systems

State-of-the-art AI models largely lack an understanding of the cause-effect relationship that governs human understanding of the real world. Consequently, these models do not generalize to unseen data, often produce unfair results, and are difficult to interpret. This has led to efforts to improve the trustworthiness aspects of AI models. Recently, causal modeling and inference methods have emerged as powerful tools. This review aims to provide the reader with an overview of causal methods that have been developed to improve the trustworthiness of AI models. We hope that our contribution will motivate future research on causality-based solutions for trustworthy AI.

Discrimination and Class Imbalance Aware Online Naive Bayes

Fairness-aware mining of massive data streams is a growing and challenging concern in the contemporary domain of machine learning. Many stream learning algorithms are used to replace humans at critical decision-making points e.g., hiring staff, assessing credit risk, etc. This calls for handling massive incoming information with minimum response delay while ensuring fair and high quality decisions. Recent discrimination-aware learning methods are optimized based on overall accuracy. However, the overall accuracy is biased in favor of the majority class; therefore, state-of-the-art methods mainly diminish discrimination by partially or completely ignoring the minority class. In this context, we propose a novel adaptation of Na\"ive Bayes to mitigate discrimination embedded in the streams while maintaining high predictive performance for both the majority and minority classes. Our proposed algorithm is simple, fast, and attains multi-objective optimization goals. To handle class imbalance and concept drifts, a dynamic instance weighting module is proposed, which gives more importance to recent instances and less importance to obsolete instances based on their membership in minority or majority class. We conducted experiments on a range of streaming and static datasets and deduced that our proposed methodology outperforms existing state-of-the-art fairness-aware methods in terms of both discrimination score and balanced accuracy.

A Multi-task Model for Sentiment Aided Stance Detection of Climate Change Tweets

Climate change has become one of the biggest challenges of our time. Social media platforms such as Twitter play an important role in raising public awareness and spreading knowledge about the dangers of the current climate crisis. With the increasing number of campaigns and communication about climate change through social media, the information could create more awareness and reach the general public and policy makers. However, these Twitter communications lead to polarization of beliefs, opinion-dominated ideologies, and often a split into two communities of climate change deniers and believers. In this paper, we propose a framework that helps identify denier statements on Twitter and thus classifies the stance of the tweet into one of the two attitudes towards climate change (denier/believer). The sentimental aspects of Twitter data on climate change are deeply rooted in general public attitudes toward climate change. Therefore, our work focuses on learning two closely related tasks: Stance Detection and Sentiment Analysis of climate change tweets. We propose a multi-task framework that performs stance detection (primary task) and sentiment analysis (auxiliary task) simultaneously. The proposed model incorporates the feature-specific and shared-specific attention frameworks to fuse multiple features and learn the generalized features for both tasks. The experimental results show that the proposed framework increases the performance of the primary task, i.e., stance detection by benefiting from the auxiliary task, i.e., sentiment analysis compared to its uni-modal and single-task variants.

Towards Efficient ECG-based Atrial Fibrillation Detection via Parameterised Hypercomplex Neural Networks

Atrial fibrillation (AF) is the most common cardiac arrhythmia and associated with a higher risk for serious conditions like stroke. Long-term recording of the electrocardiogram (ECG) with wearable devices embedded with an automatic and timely evaluation of AF helps to avoid life-threatening situations. However, the use of a deep neural network for auto-analysis of ECG on wearable devices is limited by its complexity. In this work, we propose lightweight convolutional neural networks (CNNs) for AF detection inspired by the recently proposed parameterised hypercomplex (PH) neural networks. Specifically, the convolutional and fully-connected layers of a real-valued CNN are replaced by PH convolutions and multiplications, respectively. PH layers are flexible to operate in any channel dimension n and able to capture inter-channel relations. We evaluate PH-CNNs on publicly available databases of dynamic and in-hospital ECG recordings and show comparable performance to corresponding real-valued CNNs while using approx. $1/n$ model parameters.

This Patient Looks Like That Patient: Prototypical Networks for Interpretable Diagnosis Prediction from Clinical Text

The use of deep neural models for diagnosis prediction from clinical text has shown promising results. However, in clinical practice such models must not only be accurate, but provide doctors with interpretable and helpful results. We introduce ProtoPatient, a novel method based on prototypical networks and label-wise attention with both of these abilities. ProtoPatient makes predictions based on parts of the text that are similar to prototypical patients - providing justifications that doctors understand. We evaluate the model on two publicly available clinical datasets and show that it outperforms existing baselines. Quantitative and qualitative evaluations with medical doctors further demonstrate that the model provides valuable explanations for clinical decision support.

Rites de Passage: Elucidating Displacement to Emplacement of Refugees

Social media deliberations allow to explore refugee-related is-sues. AI-based studies have investigated refugee issues mostly around a specific event and considered unimodal approaches. Contrarily, we have employed a multimodal architecture for probing the refugee journeys from their home to host nations. We draw insights from Arnold van Gennep's anthropological work 'Les Rites de Passage', which systematically analyzed an individual's transition from one group or society to another. Based on Gennep's separation-transition-incorporation framework, we have identified four phases of refugee journeys: Arrival of Refugees, Temporal stay at Asylums, Rehabilitation, and Integration of Refugees into the host nation. We collected 0.23 million multimodal tweets from April 2020 to March 2021 for testing this proposed frame-work. We find that a combination of transformer-based language models and state-of-the-art image recognition models, such as fusion of BERT+LSTM and InceptionV4, can out-perform unimodal models. Subsequently, to test the practical implication of our proposed model in real-time, we have considered 0.01 million multimodal tweets related to the 2022 Ukrainian refugee crisis. An F1-score of 71.88 % for this 2022 crisis confirms the generalizability of our proposed framework.

Example-based Explanations with Adversarial Attacks for Respiratory Sound Analysis

Respiratory sound classification is an important tool for remote screening of respiratory-related diseases such as pneumonia, asthma, and COVID-19. To facilitate the interpretability of classification results, especially ones based on deep learning, many explanation methods have been proposed using prototypes. However, existing explanation techniques often assume that the data is non-biased and the prediction results can be explained by a set of prototypical examples. In this work, we develop a unified example-based explanation method for selecting both representative data (prototypes) and outliers (criticisms). In particular, we propose a novel application of adversarial attacks to generate an explanation spectrum of data instances via an iterative fast gradient sign method. Such unified explanation can avoid over-generalisation and bias by allowing human experts to assess the model mistakes case by case. We performed a wide range of quantitative and qualitative evaluations to show that our approach generates effective and understandable explanation and is robust with many deep learning models