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Picture for Wiro J. Niessen

Wiro J. Niessen

for the Alzheimer's Disease Neuroimaging Initiative, on behalf of the Parelsnoer Neurodegenerative Diseases study group

Longitudinal diffusion MRI analysis using Segis-Net: a single-step deep-learning framework for simultaneous segmentation and registration


Dec 28, 2020
Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, M. Arfan Ikram, Meike W. Vernooij, Esther E. Bron

* Under review 

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Cross-Cohort Generalizability of Deep and Conventional Machine Learning for MRI-based Diagnosis and Prediction of Alzheimer's Disease


Dec 16, 2020
Esther E. Bron, Stefan Klein, Janne M. Papma, Lize C. Jiskoot, Vikram Venkatraghavan, Jara Linders, Pauline Aalten, Peter Paul De Deyn, Geert Jan Biessels, Jurgen A. H. R. Claassen, Huub A. M. Middelkoop, Marion Smits, Wiro J. Niessen, John C. van Swieten, Wiesje M. van der Flier, Inez H. G. B. Ramakers, Aad van der Lugt


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Learning unbiased registration and joint segmentation: evaluation on longitudinal diffusion MRI


Nov 03, 2020
Bo Li, Wiro J. Niessen, Stefan Klein, M. Arfan Ikram, Meike W. Vernooij, Esther E. Bron

* Accepted by SPIE Medical Imaging 2021 for oral presentation 

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Differential diagnosis and molecular stratification of gastrointestinal stromal tumors on CT images using a radiomics approach


Oct 15, 2020
Martijn P. A. Starmans, Milea J. M. Timbergen, Melissa Vos, Michel Renckens, Dirk J. Grünhagen, Geert J. L. H. van Leenders, Roy S. Dwarkasing, François E. J. A. Willemssen, Wiro J. Niessen, Cornelis Verhoef, Stefan Sleijfer, Jacob J. Visser, Stefan Klein

* Martijn P.A. Starmans and Milea J.M. Timbergen contributed equally 

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WHO 2016 subtyping and automated segmentation of glioma using multi-task deep learning


Oct 09, 2020
Sebastian R. van der Voort, Fatih Incekara, Maarten M. J. Wijnenga, Georgios Kapsas, Renske Gahrmann, Joost W. Schouten, Rishi Nandoe Tewarie, Geert J. Lycklama, Philip C. De Witt Hamer, Roelant S. Eijgelaar, Pim J. French, Hendrikus J. Dubbink, Arnaud J. P. E. Vincent, Wiro J. Niessen, Martin J. van den Bent, Marion Smits, Stefan Klein


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autoTICI: Automatic Brain Tissue Reperfusion Scoring on 2D DSA Images of Acute Ischemic Stroke Patients


Oct 06, 2020
Ruisheng Su, Sandra A. P. Cornelissen, Matthijs van der Sluijs, Adriaan C. G. M. van Es, Wim H. van Zwam, Diederik W. J. Dippel, Geert Lycklama, Pieter Jan van Doormaal, Wiro J. Niessen, Aad van der Lugt, Theo van Walsum

* 10 pages; submitted to IEEE TMI 

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Analyzing the effect of APOE on Alzheimer's disease progression using an event-based model for stratified populations


Sep 15, 2020
Vikram Venkatraghavan, Stefan Klein, Lana Fani, Leontine S. Ham, Henri Vrooman, M. Kamran Ikram, Wiro J. Niessen, Esther E. Bron


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Neuro4Neuro: A neural network approach for neural tract segmentation using large-scale population-based diffusion imaging


May 26, 2020
Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, M. Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron

* Preprint to be published in NeuroImage 

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Towards segmentation and spatial alignment of the human embryonic brain using deep learning for atlas-based registration


May 13, 2020
Wietske A. P. Bastiaansen, Melek Rousian, Régine P. M. Steegers-Theunissen, Wiro J. Niessen, Anton Koning, Stefan Klein


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When Weak Becomes Strong: Robust Quantification of White Matter Hyperintensities in Brain MRI scans


Apr 12, 2020
Oliver Werner, Kimberlin M. H. van Wijnen, Wiro J. Niessen, Marius de Groot, Meike W. Vernooij, Florian Dubost, Marleen de Bruijne

* 11 pages, 3 figures 

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Automated Lesion Detection by Regressing Intensity-Based Distance with a Neural Network


Jul 29, 2019
Kimberlin M. H. van Wijnen, Florian Dubost, Pinar Yilmaz, M. Arfan Ikram, Wiro J. Niessen, Hieab Adams, Meike W. Vernooij, Marleen de Bruijne

* MICCAI 2019 

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Event-Based Modeling with High-Dimensional Imaging Biomarkers for Estimating Spatial Progression of Dementia


Mar 08, 2019
Vikram Venkatraghavan, Florian Dubost, Esther E. Bron, Wiro J. Niessen, Marleen de Bruijne, Stefan Klein

* IPMI 2019 

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End-to-End Diagnosis and Segmentation Learning from Cardiac Magnetic Resonance Imaging


Oct 23, 2018
Gerard Snaauw, Dong Gong, Gabriel Maicas, Anton van den Hengel, Wiro J. Niessen, Johan Verjans, Gustavo Carneiro

* submitted to 2019 IEEE International Symposium on Biomedical Imaging (ISBI) 

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Disease Progression Timeline Estimation for Alzheimer's Disease using Discriminative Event Based Modeling


Aug 10, 2018
Vikram Venkatraghavan, Esther E. Bron, Wiro J. Niessen, Stefan Klein, for the Alzheimer's Disease Neuroimaging Initiative


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Fully Automatic and Real-Time Catheter Segmentation in X-Ray Fluoroscopy


Jul 17, 2017
Pierre Ambrosini, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum

* Accepted to MICCAI 2017 

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