The CoT Encyclopedia: Analyzing, Predicting, and Controlling how a Reasoning Model will Think

Long chain-of-thought (CoT) is an essential ingredient in effective usage of modern large language models, but our understanding of the reasoning strategies underlying these capabilities remains limited. While some prior works have attempted to categorize CoTs using predefined strategy types, such approaches are constrained by human intuition and fail to capture the full diversity of model behaviors. In this work, we introduce the CoT Encyclopedia, a bottom-up framework for analyzing and steering model reasoning. Our method automatically extracts diverse reasoning criteria from model-generated CoTs, embeds them into a semantic space, clusters them into representative categories, and derives contrastive rubrics to interpret reasoning behavior. Human evaluations show that this framework produces more interpretable and comprehensive analyses than existing methods. Moreover, we demonstrate that this understanding enables performance gains: we can predict which strategy a model is likely to use and guide it toward more effective alternatives. Finally, we provide practical insights, such as that training data format (e.g., free-form vs. multiple-choice) has a far greater impact on reasoning behavior than data domain, underscoring the importance of format-aware model design.

Paper2Code: Automating Code Generation from Scientific Papers in Machine Learning

Despite the rapid growth of machine learning research, corresponding code implementations are often unavailable, making it slow and labor-intensive for researchers to reproduce results and build upon prior work. In the meantime, recent Large Language Models (LLMs) excel at understanding scientific documents and generating high-quality code. Inspired by this, we introduce PaperCoder, a multi-agent LLM framework that transforms machine learning papers into functional code repositories. PaperCoder operates in three stages: planning, where it constructs a high-level roadmap, designs the system architecture with diagrams, identifies file dependencies, and generates configuration files; analysis, which focuses on interpreting implementation-specific details; and generation, where modular, dependency-aware code is produced. Moreover, each phase is instantiated through a set of specialized agents designed to collaborate effectively across the pipeline. We then evaluate PaperCoder on generating code implementations from machine learning papers based on both model-based and human evaluations, specifically from the original paper authors, with author-released repositories as ground truth if available. Our results demonstrate the effectiveness of PaperCoder in creating high-quality, faithful implementations. Furthermore, it consistently shows strengths in the recently released PaperBench benchmark, surpassing strong baselines by substantial margins.

Scaling Evaluation-time Compute with Reasoning Models as Process Evaluators

As language model (LM) outputs get more and more natural, it is becoming more difficult than ever to evaluate their quality. Simultaneously, increasing LMs' "thinking" time through scaling test-time compute has proven an effective technique to solve challenging problems in domains such as math and code. This raises a natural question: can an LM's evaluation capability also be improved by spending more test-time compute? To answer this, we investigate employing reasoning models-LMs that natively generate long chain-of-thought reasoning-as evaluators. Specifically, we examine methods to leverage more test-time compute by (1) using reasoning models, and (2) prompting these models to evaluate not only the response as a whole (i.e., outcome evaluation) but also assess each step in the response separately (i.e., process evaluation). In experiments, we observe that the evaluator's performance improves monotonically when generating more reasoning tokens, similar to the trends observed in LM-based generation. Furthermore, we use these more accurate evaluators to rerank multiple generations, and demonstrate that spending more compute at evaluation time can be as effective as using more compute at generation time in improving an LM's problem-solving capability.

Efficient Long Context Language Model Retrieval with Compression

Long Context Language Models (LCLMs) have emerged as a new paradigm to perform Information Retrieval (IR), which enables the direct ingestion and retrieval of information by processing an entire corpus in their single context, showcasing the potential to surpass traditional sparse and dense retrieval methods. However, processing a large number of passages within in-context for retrieval is computationally expensive, and handling their representations during inference further exacerbates the processing time; thus, we aim to make LCLM retrieval more efficient and potentially more effective with passage compression. Specifically, we propose a new compression approach tailored for LCLM retrieval, which is trained to maximize the retrieval performance while minimizing the length of the compressed passages. To accomplish this, we generate the synthetic data, where compressed passages are automatically created and labeled as chosen or rejected according to their retrieval success for a given query, and we train the proposed Compression model for Long context Retrieval (CoLoR) with this data via preference optimization while adding the length regularization loss on top of it to enforce brevity. Through extensive experiments on 9 datasets, we show that CoLoR improves the retrieval performance by 6% while compressing the in-context size by a factor of 1.91.

Evaluating Language Models as Synthetic Data Generators

Given the increasing use of synthetic data in language model (LM) post-training, an LM's ability to generate high-quality data has become nearly as crucial as its ability to solve problems directly. While prior works have focused on developing effective data generation methods, they lack systematic comparison of different LMs as data generators in a unified setting. To address this gap, we propose AgoraBench, a benchmark that provides standardized settings and metrics to evaluate LMs' data generation abilities. Through synthesizing 1.26 million training instances using 6 LMs and training 99 student models, we uncover key insights about LMs' data generation capabilities. First, we observe that LMs exhibit distinct strengths. For instance, GPT-4o excels at generating new problems, while Claude-3.5-Sonnet performs better at enhancing existing ones. Furthermore, our analysis reveals that an LM's data generation ability doesn't necessarily correlate with its problem-solving ability. Instead, multiple intrinsic features of data quality-including response quality, perplexity, and instruction difficulty-collectively serve as better indicators. Finally, we demonstrate that strategic choices in output format and cost-conscious model selection significantly impact data generation effectiveness.

How Does Vision-Language Adaptation Impact the Safety of Vision Language Models?

Vision-Language adaptation (VL adaptation) transforms Large Language Models (LLMs) into Large Vision-Language Models (LVLMs) for multimodal tasks, but this process often compromises the inherent safety capabilities embedded in the original LLMs. Despite potential harmfulness due to weakened safety measures, in-depth analysis on the effects of VL adaptation on safety remains under-explored. This study examines how VL adaptation influences safety and evaluates the impact of safety fine-tuning methods. Our analysis reveals that safety degradation occurs during VL adaptation, even when the training data is safe. While safety tuning techniques like supervised fine-tuning with safety datasets or reinforcement learning from human feedback mitigate some risks, they still lead to safety degradation and a reduction in helpfulness due to over-rejection issues. Further analysis of internal model weights suggests that VL adaptation may impact certain safety-related layers, potentially lowering overall safety levels. Additionally, our findings demonstrate that the objectives of VL adaptation and safety tuning are divergent, which often results in their simultaneous application being suboptimal. To address this, we suggest the weight merging approach as an optimal solution effectively reducing safety degradation while maintaining helpfulness. These insights help guide the development of more reliable and secure LVLMs for real-world applications.

The BiGGen Bench: A Principled Benchmark for Fine-grained Evaluation of Language Models with Language Models

As language models (LMs) become capable of handling a wide range of tasks, their evaluation is becoming as challenging as their development. Most generation benchmarks currently assess LMs using abstract evaluation criteria like helpfulness and harmlessness, which often lack the flexibility and granularity of human assessment. Additionally, these benchmarks tend to focus disproportionately on specific capabilities such as instruction following, leading to coverage bias. To overcome these limitations, we introduce the BiGGen Bench, a principled generation benchmark designed to thoroughly evaluate nine distinct capabilities of LMs across 77 diverse tasks. A key feature of the BiGGen Bench is its use of instance-specific evaluation criteria, closely mirroring the nuanced discernment of human evaluation. We apply this benchmark to assess 103 frontier LMs using five evaluator LMs. Our code, data, and evaluation results are all publicly available at https://github.com/prometheus-eval/prometheus-eval/tree/main/BiGGen-Bench.

Aligning to Thousands of Preferences via System Message Generalization

Although humans inherently have diverse values, current large language model (LLM) alignment methods often assume that aligning LLMs with the general public's preferences is optimal. A major challenge in adopting a more individualized approach to LLM alignment is its lack of scalability, as it involves repeatedly acquiring preference data and training new reward models and LLMs for each individual's preferences. To address these challenges, we propose a new paradigm where users specify what they value most within the system message, steering the LLM's generation behavior to better align with the user's intentions. However, a naive application of such an approach is non-trivial since LLMs are typically trained on a uniform system message (e.g., "You are a helpful assistant") which limits their ability to generalize to diverse, unseen system messages. To improve this generalization, we create the Multifaceted Collection, a preference dataset with 192k combinations of values beyond generic helpfulness and harmlessness, spanning 65k user instructions. Using this dataset, we train a 7B LLM called Janus and test it on 921 prompts from 5 benchmarks (AlpacaEval 2.0, FLASK, Koala, MT-Bench, and Self-Instruct) by adding various unseen system messages that reflect user preferences. Janus achieves tie+win rate of 75.2%, 72.4%, and 66.4% against Mistral 7B Instruct v0.2, GPT-3.5 Turbo, and GPT-4, respectively. Unexpectedly, on three benchmarks focused on response helpfulness (AlpacaEval 2.0, MT-Bench, Arena Hard Auto v0.1), Janus also outperforms LLaMA 3 8B Instruct by a +4.0%, +0.1%, +3.0% margin, underscoring that training with a vast array of system messages could also enhance alignment to the general public's preference as well. Our code, dataset, benchmark, and models are available at https://github.com/kaistAI/Janus.

LG AI Research & KAIST at EHRSQL 2024: Self-Training Large Language Models with Pseudo-Labeled Unanswerable Questions for a Reliable Text-to-SQL System on EHRs

Text-to-SQL models are pivotal for making Electronic Health Records (EHRs) accessible to healthcare professionals without SQL knowledge. With the advancements in large language models, these systems have become more adept at translating complex questions into SQL queries. Nonetheless, the critical need for reliability in healthcare necessitates these models to accurately identify unanswerable questions or uncertain predictions, preventing misinformation. To address this problem, we present a self-training strategy using pseudo-labeled unanswerable questions to enhance the reliability of text-to-SQL models for EHRs. This approach includes a two-stage training process followed by a filtering method based on the token entropy and query execution. Our methodology's effectiveness is validated by our top performance in the EHRSQL 2024 shared task, showcasing the potential to improve healthcare decision-making through more reliable text-to-SQL systems.

Prometheus-Vision: Vision-Language Model as a Judge for Fine-Grained Evaluation

Assessing long-form responses generated by Vision-Language Models (VLMs) is challenging. It not only requires checking whether the VLM follows the given instruction but also verifying whether the text output is properly grounded on the given image. Inspired by the recent approach of evaluating LMs with LMs, in this work, we propose to evaluate VLMs with VLMs. For this purpose, we present a new feedback dataset called the Perception Collection, encompassing 15K customized score rubrics that users might care about during assessment. Using the Perception Collection, we train Prometheus-Vision, the first open-source VLM evaluator model that can understand the user-defined score criteria during evaluation. Prometheus-Vision shows the highest Pearson correlation with human evaluators and GPT-4V among open-source models, showing its effectiveness for transparent and accessible evaluation of VLMs. We open-source our code, dataset, and model at https://github.com/kaistAI/prometheus-vision