A competitive baseline for deep learning enhanced data assimilation using conditional Gaussian ensemble Kalman filtering

Ensemble Kalman Filtering (EnKF) is a popular technique for data assimilation, with far ranging applications. However, the vanilla EnKF framework is not well-defined when perturbations are nonlinear. We study two non-linear extensions of the vanilla EnKF - dubbed the conditional-Gaussian EnKF (CG-EnKF) and the normal score EnKF (NS-EnKF) - which sidestep assumptions of linearity by constructing the Kalman gain matrix with the `conditional Gaussian' update formula in place of the traditional one. We then compare these models against a state-of-the-art deep learning based particle filter called the score filter (SF). This model uses an expensive score diffusion model for estimating densities and also requires a strong assumption on the perturbation operator for validity. In our comparison, we find that CG-EnKF and NS-EnKF dramatically outperform SF for a canonical problem in high-dimensional multiscale data assimilation given by the Lorenz-96 system. Our analysis also demonstrates that the CG-EnKF and NS-EnKF can handle highly non-Gaussian additive noise perturbations, with the latter typically outperforming the former.

Measure-Theoretic Time-Delay Embedding

The celebrated Takens' embedding theorem provides a theoretical foundation for reconstructing the full state of a dynamical system from partial observations. However, the classical theorem assumes that the underlying system is deterministic and that observations are noise-free, limiting its applicability in real-world scenarios. Motivated by these limitations, we rigorously establish a measure-theoretic generalization that adopts an Eulerian description of the dynamics and recasts the embedding as a pushforward map between probability spaces. Our mathematical results leverage recent advances in optimal transportation theory. Building on our novel measure-theoretic time-delay embedding theory, we have developed a new computational framework that forecasts the full state of a dynamical system from time-lagged partial observations, engineered with better robustness to handle sparse and noisy data. We showcase the efficacy and versatility of our approach through several numerical examples, ranging from the classic Lorenz-63 system to large-scale, real-world applications such as NOAA sea surface temperature forecasting and ERA5 wind field reconstruction.

Mesh-based Super-Resolution of Fluid Flows with Multiscale Graph Neural Networks

A graph neural network (GNN) approach is introduced in this work which enables mesh-based three-dimensional super-resolution of fluid flows. In this framework, the GNN is designed to operate not on the full mesh-based field at once, but on localized meshes of elements (or cells) directly. To facilitate mesh-based GNN representations in a manner similar to spectral (or finite) element discretizations, a baseline GNN layer (termed a message passing layer, which updates local node properties) is modified to account for synchronization of coincident graph nodes, rendering compatibility with commonly used element-based mesh connectivities. The architecture is multiscale in nature, and is comprised of a combination of coarse-scale and fine-scale message passing layer sequences (termed processors) separated by a graph unpooling layer. The coarse-scale processor embeds a query element (alongside a set number of neighboring coarse elements) into a single latent graph representation using coarse-scale synchronized message passing over the element neighborhood, and the fine-scale processor leverages additional message passing operations on this latent graph to correct for interpolation errors. Demonstration studies are performed using hexahedral mesh-based data from Taylor-Green Vortex flow simulations at Reynolds numbers of 1600 and 3200. Through analysis of both global and local errors, the results ultimately show how the GNN is able to produce accurate super-resolved fields compared to targets in both coarse-scale and multiscale model configurations. Reconstruction errors for fixed architectures were found to increase in proportion to the Reynolds number, while the inclusion of surrounding coarse element neighbors was found to improve predictions at Re=1600, but not at Re=3200.

Higher order quantum reservoir computing for non-intrusive reduced-order models

Forecasting dynamical systems is of importance to numerous real-world applications. When possible, dynamical systems forecasts are constructed based on first-principles-based models such as through the use of differential equations. When these equations are unknown, non-intrusive techniques must be utilized to build predictive models from data alone. Machine learning (ML) methods have recently been used for such tasks. Moreover, ML methods provide the added advantage of significant reductions in time-to-solution for predictions in contrast with first-principle based models. However, many state-of-the-art ML-based methods for forecasting rely on neural networks, which may be expensive to train and necessitate requirements for large amounts of memory. In this work, we propose a quantum mechanics inspired ML modeling strategy for learning nonlinear dynamical systems that provides data-driven forecasts for complex dynamical systems with reduced training time and memory costs. This approach, denoted the quantum reservoir computing technique (QRC), is a hybrid quantum-classical framework employing an ensemble of interconnected small quantum systems via classical linear feedback connections. By mapping the dynamical state to a suitable quantum representation amenable to unitary operations, QRC is able to predict complex nonlinear dynamical systems in a stable and accurate manner. We demonstrate the efficacy of this framework through benchmark forecasts of the NOAA Optimal Interpolation Sea Surface Temperature dataset and compare the performance of QRC to other ML methods.

Divide And Conquer: Learning Chaotic Dynamical Systems With Multistep Penalty Neural Ordinary Differential Equations

Forecasting high-dimensional dynamical systems is a fundamental challenge in various fields, such as the geosciences and engineering. Neural Ordinary Differential Equations (NODEs), which combine the power of neural networks and numerical solvers, have emerged as a promising algorithm for forecasting complex nonlinear dynamical systems. However, classical techniques used for NODE training are ineffective for learning chaotic dynamical systems. In this work, we propose a novel NODE-training approach that allows for robust learning of chaotic dynamical systems. Our method addresses the challenges of non-convexity and exploding gradients associated with underlying chaotic dynamics. Training data trajectories from such systems are split into multiple, non-overlapping time windows. In addition to the deviation from the training data, the optimization loss term further penalizes the discontinuities of the predicted trajectory between the time windows. The window size is selected based on the fastest Lyapunov time scale of the system. Multi-step penalty(MP) method is first demonstrated on Lorenz equation, to illustrate how it improves the loss landscape and thereby accelerating the optimization convergence. MP method can optimize chaotic systems in a manner similar to least-squares shadowing with significantly lower computational costs. Our proposed algorithm, denoted the Multistep Penalty NODE(MP-NODE), is applied to chaotic systems such as the Kuramoto-Sivashinsky equation and the two-dimensional Kolmogorov flow. It is observed that MP-NODE provide viable performance for such chaotic systems, not only for short-term trajectory predictions but also for invariant statistics that are hallmarks of the chaotic nature of these dynamics.

A note on the error analysis of data-driven closure models for large eddy simulations of turbulence

In this work, we provide a mathematical formulation for error propagation in flow trajectory prediction using data-driven turbulence closure modeling. Under the assumption that the predicted state of a large eddy simulation prediction must be close to that of a subsampled direct numerical simulation, we retrieve an upper bound for the prediction error when utilizing a data-driven closure model. We also demonstrate that this error is significantly affected by the time step size and the Jacobian which play a role in amplifying the initial one-step error made by using the closure. Our analysis also shows that the error propagates exponentially with rollout time and the upper bound of the system Jacobian which is itself influenced by the Jacobian of the closure formulation. These findings could enable the development of new regularization techniques for ML models based on the identified error-bound terms, improving their robustness and reducing error propagation.

LUCIE: A Lightweight Uncoupled ClImate Emulator with long-term stability and physical consistency for O(1000)-member ensembles

We present LUCIE, a $1000$- member ensemble data-driven atmospheric emulator that remains stable during autoregressive inference for thousands of years without a drifting climatology. LUCIE has been trained on $9.5$ years of coarse-resolution ERA5 data with $4$ prognostic variables on a single A100 GPU for $2.4$ h. Owing to the cheap computational cost of inference, $1000$ model ensembles are executed for $5$ years to compute an uncertainty-quantified climatology for the prognostic variables that closely match the climatology obtained from ERA5. Unlike all the other state-of-the-art AI weather models, LUCIE is neither unstable nor does it produce hallucinations that result in unphysical drift of the emulated climate. Furthermore, LUCIE \textbf{does not impose} ``true" sea-surface temperature (SST) from a coupled numerical model to enforce the annual cycle in temperature. We demonstrate the long-term climatology obtained from LUCIE as well as subseasonal-to-seasonal scale prediction skills on the prognostic variables. We also demonstrate a $20$-year emulation with LUCIE here: https://drive.google.com/file/d/1mRmhx9RRGiF3uGo_mRQK8RpwQatrCiMn/view

Leveraging Interpolation Models and Error Bounds for Verifiable Scientific Machine Learning

Effective verification and validation techniques for modern scientific machine learning workflows are challenging to devise. Statistical methods are abundant and easily deployed, but often rely on speculative assumptions about the data and methods involved. Error bounds for classical interpolation techniques can provide mathematically rigorous estimates of accuracy, but often are difficult or impractical to determine computationally. In this work, we present a best-of-both-worlds approach to verifiable scientific machine learning by demonstrating that (1) multiple standard interpolation techniques have informative error bounds that can be computed or estimated efficiently; (2) comparative performance among distinct interpolants can aid in validation goals; (3) deploying interpolation methods on latent spaces generated by deep learning techniques enables some interpretability for black-box models. We present a detailed case study of our approach for predicting lift-drag ratios from airfoil images. Code developed for this work is available in a public Github repository.

Scaling transformer neural networks for skillful and reliable medium-range weather forecasting

Weather forecasting is a fundamental problem for anticipating and mitigating the impacts of climate change. Recently, data-driven approaches for weather forecasting based on deep learning have shown great promise, achieving accuracies that are competitive with operational systems. However, those methods often employ complex, customized architectures without sufficient ablation analysis, making it difficult to understand what truly contributes to their success. Here we introduce Stormer, a simple transformer model that achieves state-of-the-art performance on weather forecasting with minimal changes to the standard transformer backbone. We identify the key components of Stormer through careful empirical analyses, including weather-specific embedding, randomized dynamics forecast, and pressure-weighted loss. At the core of Stormer is a randomized forecasting objective that trains the model to forecast the weather dynamics over varying time intervals. During inference, this allows us to produce multiple forecasts for a target lead time and combine them to obtain better forecast accuracy. On WeatherBench 2, Stormer performs competitively at short to medium-range forecasts and outperforms current methods beyond 7 days, while requiring orders-of-magnitude less training data and compute. Additionally, we demonstrate Stormer's favorable scaling properties, showing consistent improvements in forecast accuracy with increases in model size and training tokens. Code and checkpoints will be made publicly available.

Interpretable Fine-Tuning for Graph Neural Network Surrogate Models

Data-based surrogate modeling has surged in capability in recent years with the emergence of graph neural networks (GNNs), which can operate directly on mesh-based representations of data. The goal of this work is to introduce an interpretable fine-tuning strategy for GNNs, with application to unstructured mesh-based fluid dynamics modeling. The end result is a fine-tuned GNN that adds interpretability to a pre-trained baseline GNN through an adaptive sub-graph sampling strategy that isolates regions in physical space intrinsically linked to the forecasting task, while retaining the predictive capability of the baseline. The structures identified by the fine-tuned GNNs, which are adaptively produced in the forward pass as explicit functions of the input, serve as an accessible link between the baseline model architecture, the optimization goal, and known problem-specific physics. Additionally, through a regularization procedure, the fine-tuned GNNs can also be used to identify, during inference, graph nodes that correspond to a majority of the anticipated forecasting error, adding a novel interpretable error-tagging capability to baseline models. Demonstrations are performed using unstructured flow data sourced from flow over a backward-facing step at high Reynolds numbers.