S1-Omni: A Unified Multimodal Reasoning Model for Scientific Understanding, Prediction, and Generation

We present S1-Omni, a unified multimodal reasoning model for scientific understanding, prediction, and generation. AI for Science (AI4S) has advanced significantly through domain-specific models, tool-augmented LLMs, and scientific language models. However, model capabilities remain highly fragmented, limiting the joint modeling of heterogeneous data, scientific laws, and expert knowledge. S1-Omni addresses this gap by consolidating these capabilities into a single, coherent scientific reasoning model. The architecture of S1-Omni is built upon three core components: unified representation of scientific data, natural-world knowledge alignment, and decoding for domain-specific tasks. First, S1-Omni maps natural-language instructions and scientific objects, including CIF, SMILES, protein sequences, spectra, and scientific images, into a shared representation space. Second, it incorporates scientific laws and expert knowledge into data construction and training, enabling the model to reason from scientific evidence. Third, it performs task-specific decoding to support a broad range of applications, including property prediction, spectrum-to-molecular generation, protein site and structure prediction, and scientific image generation and editing. S1-Omni is trained on S1-Omni-Corpus, which covers 200 scientific tasks and contains millions of reasoning samples, and is evaluated on over 60 scientific benchmarks. It outperforms GPT-5.5 and Gemini-3.1-Pro on most benchmarks and matches or surpasses domain-specific models on several benchmarks. Overall, S1-Omni provides a practical path toward unified scientific modeling.

S1-Omni-Image: A Unified Model for Scientific Image Understanding, Generation, and Editing

We present S1-Omni-Image, an open-weight unified multimodal model for scientific image understanding, generation, and editing. Unlike general-purpose image generation models, scientific image tasks require not only high-fidelity synthesis, but also robust understanding of scientific semantics, structural relations, domain knowledge, and task intent. To this end, S1-Omni-Image builds on the scientific multimodal reasoning backbone S1-VL-32B and couples its understanding capability with an image generation module under a unified think-before-generate paradigm. Given a user instruction, the model first produces a task-oriented reasoning trace, a textual answer, and a task special token; their hidden states are then injected into the generation module to condition image generation or editing. S1-Omni-Image supports scientific image understanding, generation, and editing in a unified framework. For generation, it focuses on scientific illustrations and text rendering, including logical diagrams, relational comparisons, data charts, and realistic scientific visualizations. For editing, it casts segmentation and other domain-specific vision tasks as native image editing problems, enabling multi-turn illustration editing, medical and geographic image segmentation, medical image translation, and scientific image super-resolution. We construct SciGenEdit, a 314K-sample training dataset, and release the model weights, inference code, and SciGenEdit-10K. Experiments show that S1-Omni-Image substantially improves scientific image generation and editing while preserving the scientific image understanding capability inherited from S1-VL-32B. It outperforms open-source models on GenExam and TechImage-Bench, achieves state-of-the-art results on four editing benchmarks including MSD, cigRockSEM, SynthRAD2025, and IXI, and maintains stable performance on scientific image understanding evaluations.

ChartReasoner: Code-Driven Modality Bridging for Long-Chain Reasoning in Chart Question Answering

Recently, large language models have shown remarkable reasoning capabilities through long-chain reasoning before responding. However, how to extend this capability to visual reasoning tasks remains an open challenge. Existing multimodal reasoning approaches transfer such visual reasoning task into textual reasoning task via several image-to-text conversions, which often lose critical structural and semantic information embedded in visualizations, especially for tasks like chart question answering that require a large amount of visual details. To bridge this gap, we propose ChartReasoner, a code-driven novel two-stage framework designed to enable precise, interpretable reasoning over charts. We first train a high-fidelity model to convert diverse chart images into structured ECharts codes, preserving both layout and data semantics as lossless as possible. Then, we design a general chart reasoning data synthesis pipeline, which leverages this pretrained transport model to automatically and scalably generate chart reasoning trajectories and utilizes a code validator to filter out low-quality samples. Finally, we train the final multimodal model using a combination of supervised fine-tuning and reinforcement learning on our synthesized chart reasoning dataset and experimental results on four public benchmarks clearly demonstrate the effectiveness of our proposed ChartReasoner. It can preserve the original details of the charts as much as possible and perform comparably with state-of-the-art open-source models while using fewer parameters, approaching the performance of proprietary systems like GPT-4o in out-of-domain settings.