Neural Annotation Refinement: Development of a New 3D Dataset for Adrenal Gland Analysis

The human annotations are imperfect, especially when produced by junior practitioners. Multi-expert consensus is usually regarded as golden standard, while this annotation protocol is too expensive to implement in many real-world projects. In this study, we propose a method to refine human annotation, named Neural Annotation Refinement (NeAR). It is based on a learnable implicit function, which decodes a latent vector into represented shape. By integrating the appearance as an input of implicit functions, the appearance-aware NeAR fixes the annotation artefacts. Our method is demonstrated on the application of adrenal gland analysis. We first show that the NeAR can repair distorted golden standards on a public adrenal gland segmentation dataset. Besides, we develop a new Adrenal gLand ANalysis (ALAN) dataset with the proposed NeAR, where each case consists of a 3D shape of adrenal gland and its diagnosis label (normal vs. abnormal) assigned by experts. We show that models trained on the shapes repaired by the NeAR can diagnose adrenal glands better than the original ones. The ALAN dataset will be open-source, with 1,584 shapes for adrenal gland diagnosis, which serves as a new benchmark for medical shape analysis. Code and dataset are available at https://github.com/M3DV/NeAR.

Deep Active Latent Surfaces for Medical Geometries

Shape priors have long been known to be effective when reconstructing 3D shapes from noisy or incomplete data. When using a deep-learning based shape representation, this often involves learning a latent representation, which can be either in the form of a single global vector or of multiple local ones. The latter allows more flexibility but is prone to overfitting. In this paper, we advocate a hybrid approach representing shapes in terms of 3D meshes with a separate latent vector at each vertex. During training the latent vectors are constrained to have the same value, which avoids overfitting. For inference, the latent vectors are updated independently while imposing spatial regularization constraints. We show that this gives us both flexibility and generalization capabilities, which we demonstrate on several medical image processing tasks.

On Triangulation as a Form of Self-Supervision for 3D Human Pose Estimation

Supervised approaches to 3D pose estimation from single images are remarkably effective when labeled data is abundant. Therefore, much of the recent attention has shifted towards semi and (or) weakly supervised learning. Generating an effective form of supervision with little annotations still poses major challenges in crowded scenes. However, since it is easy to observe a scene from multiple cameras, we propose to impose multi-view geometrical constraints by means of a differentiable triangulation and to use it as form of self-supervision during training when no labels are available. We therefore train a 2D pose estimator in such a way that its predictions correspond to the re-projection of the triangulated 3D one and train an auxiliary network on them to produce the final 3D poses. We complement the triangulation with a weighting mechanism that nullify the impact of noisy predictions caused by self-occlusion or occlusion from other subjects. Our experimental results on Human3.6M and MPI-INF-3DHP substantiate the significance of our weighting strategy where we obtain state-of-the-art results in the semi and weakly supervised learning setup. We also contribute a new multi-player sports dataset that features occlusion, and show the effectiveness of our algorithm over baseline triangulation methods.

Perspective Flow Aggregation for Data-Limited 6D Object Pose Estimation

Most recent 6D object pose estimation methods, including unsupervised ones, require many real training images. Unfortunately, for some applications, such as those in space or deep under water, acquiring real images, even unannotated, is virtually impossible. In this paper, we propose a method that can be trained solely on synthetic images, or optionally using a few additional real ones. Given a rough pose estimate obtained from a first network, it uses a second network to predict a dense 2D correspondence field between the image rendered using the rough pose and the real image and infers the required pose correction. This approach is much less sensitive to the domain shift between synthetic and real images than state-of-the-art methods. It performs on par with methods that require annotated real images for training when not using any, and outperforms them considerably when using as few as twenty real images.

Overcoming the Domain Gap in Neural Action Representations

Relating animal behaviors to brain activity is a fundamental goal in neuroscience, with practical applications in building robust brain-machine interfaces. However, the domain gap between individuals is a major issue that prevents the training of general models that work on unlabeled subjects. Since 3D pose data can now be reliably extracted from multi-view video sequences without manual intervention, we propose to use it to guide the encoding of neural action representations together with a set of neural and behavioral augmentations exploiting the properties of microscopy imaging. To reduce the domain gap, during training, we swap neural and behavioral data across animals that seem to be performing similar actions. To demonstrate this, we test our methods on three very different multimodal datasets; one that features flies and their neural activity, one that contains human neural Electrocorticography (ECoG) data, and lastly the RGB video data of human activities from different viewpoints.

Adversarial Parametric Pose Prior

The Skinned Multi-Person Linear (SMPL) model can represent a human body by mapping pose and shape parameters to body meshes. This has been shown to facilitate inferring 3D human pose and shape from images via different learning models. However, not all pose and shape parameter values yield physically-plausible or even realistic body meshes. In other words, SMPL is under-constrained and may thus lead to invalid results when used to reconstruct humans from images, either by directly optimizing its parameters, or by learning a mapping from the image to these parameters. In this paper, we therefore learn a prior that restricts the SMPL parameters to values that produce realistic poses via adversarial training. We show that our learned prior covers the diversity of the real-data distribution, facilitates optimization for 3D reconstruction from 2D keypoints, and yields better pose estimates when used for regression from images. We found that the prior based on spherical distribution gets the best results. Furthermore, in all these tasks, it outperforms the state-of-the-art VAE-based approach to constraining the SMPL parameters.

Adjusting the Ground Truth Annotations for Connectivity-Based Learning to Delineate

Deep learning-based approaches to delineating 3D structure depend on accurate annotations to train the networks. Yet, in practice, people, no matter how conscientious, have trouble precisely delineating in 3D and on a large scale, in part because the data is often hard to interpret visually and in part because the 3D interfaces are awkward to use. In this paper, we introduce a method that explicitly accounts for annotation inaccuracies. To this end, we treat the annotations as active contour models that can deform themselves while preserving their topology. This enables us to jointly train the network and correct potential errors in the original annotations. The result is an approach that boosts performance of deep networks trained with potentially inaccurate annotations.

Dyadic Human Motion Prediction

Prior work on human motion forecasting has mostly focused on predicting the future motion of single subjects in isolation from their past pose sequence. In the presence of closely interacting people, however, this strategy fails to account for the dependencies between the different subject's motions. In this paper, we therefore introduce a motion prediction framework that explicitly reasons about the interactions of two observed subjects. Specifically, we achieve this by introducing a pairwise attention mechanism that models the mutual dependencies in the motion history of the two subjects. This allows us to preserve the long-term motion dynamics in a more realistic way and more robustly predict unusual and fast-paced movements, such as the ones occurring in a dance scenario. To evaluate this, and because no existing motion prediction datasets depict two closely-interacting subjects, we introduce the LindyHop600K dance dataset. Our results evidence that our approach outperforms the state-of-the-art single person motion prediction techniques.