DeepSketch: A New Machine Learning-Based Reference Search Technique for Post-Deduplication Delta Compression

Data reduction in storage systems is becoming increasingly important as an effective solution to minimize the management cost of a data center. To maximize data-reduction efficiency, existing post-deduplication delta-compression techniques perform delta compression along with traditional data deduplication and lossless compression. Unfortunately, we observe that existing techniques achieve significantly lower data-reduction ratios than the optimal due to their limited accuracy in identifying similar data blocks. In this paper, we propose DeepSketch, a new reference search technique for post-deduplication delta compression that leverages the learning-to-hash method to achieve higher accuracy in reference search for delta compression, thereby improving data-reduction efficiency. DeepSketch uses a deep neural network to extract a data block's sketch, i.e., to create an approximate data signature of the block that can preserve similarity with other blocks. Our evaluation using eleven real-world workloads shows that DeepSketch improves the data-reduction ratio by up to 33% (21% on average) over a state-of-the-art post-deduplication delta-compression technique.

EcoFlow: Efficient Convolutional Dataflows for Low-Power Neural Network Accelerators

Dilated and transposed convolutions are widely used in modern convolutional neural networks (CNNs). These kernels are used extensively during CNN training and inference of applications such as image segmentation and high-resolution image generation. Although these kernels have grown in popularity, they stress current compute systems due to their high memory intensity, exascale compute demands, and large energy consumption. We find that commonly-used low-power CNN inference accelerators based on spatial architectures are not optimized for both of these convolutional kernels. Dilated and transposed convolutions introduce significant zero padding when mapped to the underlying spatial architecture, significantly degrading performance and energy efficiency. Existing approaches that address this issue require significant design changes to the otherwise simple, efficient, and well-adopted architectures used to compute direct convolutions. To address this challenge, we propose EcoFlow, a new set of dataflows and mapping algorithms for dilated and transposed convolutions. These algorithms are tailored to execute efficiently on existing low-cost, small-scale spatial architectures and requires minimal changes to the network-on-chip of existing accelerators. EcoFlow eliminates zero padding through careful dataflow orchestration and data mapping tailored to the spatial architecture. EcoFlow enables flexible and high-performance transpose and dilated convolutions on architectures that are otherwise optimized for CNN inference. We evaluate the efficiency of EcoFlow on CNN training workloads and Generative Adversarial Network (GAN) training workloads. Experiments in our new cycle-accurate simulator show that EcoFlow 1) reduces end-to-end CNN training time between 7-85%, and 2) improves end-to-end GAN training performance between 29-42%, compared to state-of-the-art CNN inference accelerators.

Pythia: A Customizable Hardware Prefetching Framework Using Online Reinforcement Learning

Past research has proposed numerous hardware prefetching techniques, most of which rely on exploiting one specific type of program context information (e.g., program counter, cacheline address) to predict future memory accesses. These techniques either completely neglect a prefetcher's undesirable effects (e.g., memory bandwidth usage) on the overall system, or incorporate system-level feedback as an afterthought to a system-unaware prefetch algorithm. We show that prior prefetchers often lose their performance benefit over a wide range of workloads and system configurations due to their inherent inability to take multiple different types of program context and system-level feedback information into account while prefetching. In this paper, we make a case for designing a holistic prefetch algorithm that learns to prefetch using multiple different types of program context and system-level feedback information inherent to its design. To this end, we propose Pythia, which formulates the prefetcher as a reinforcement learning agent. For every demand request, Pythia observes multiple different types of program context information to make a prefetch decision. For every prefetch decision, Pythia receives a numerical reward that evaluates prefetch quality under the current memory bandwidth usage. Pythia uses this reward to reinforce the correlation between program context information and prefetch decision to generate highly accurate, timely, and system-aware prefetch requests in the future. Our extensive evaluations using simulation and hardware synthesis show that Pythia outperforms multiple state-of-the-art prefetchers over a wide range of workloads and system configurations, while incurring only 1.03% area overhead over a desktop-class processor and no software changes in workloads. The source code of Pythia can be freely downloaded from https://github.com/CMU-SAFARI/Pythia.

Google Neural Network Models for Edge Devices: Analyzing and Mitigating Machine Learning Inference Bottlenecks

Emerging edge computing platforms often contain machine learning (ML) accelerators that can accelerate inference for a wide range of neural network (NN) models. These models are designed to fit within the limited area and energy constraints of the edge computing platforms, each targeting various applications (e.g., face detection, speech recognition, translation, image captioning, video analytics). To understand how edge ML accelerators perform, we characterize the performance of a commercial Google Edge TPU, using 24 Google edge NN models (which span a wide range of NN model types) and analyzing each NN layer within each model. We find that the Edge TPU suffers from three major shortcomings: (1) it operates significantly below peak computational throughput, (2) it operates significantly below its theoretical energy efficiency, and (3) its memory system is a large energy and performance bottleneck. Our characterization reveals that the one-size-fits-all, monolithic design of the Edge TPU ignores the high degree of heterogeneity both across different NN models and across different NN layers within the same NN model, leading to the shortcomings we observe. We propose a new acceleration framework called Mensa. Mensa incorporates multiple heterogeneous edge ML accelerators (including both on-chip and near-data accelerators), each of which caters to the characteristics of a particular subset of NN models and layers. During NN inference, for each NN layer, Mensa decides which accelerator to schedule the layer on, taking into account both the optimality of each accelerator for the layer and layer-to-layer communication costs. Averaged across all 24 Google edge NN models, Mensa improves energy efficiency and throughput by 3.0x and 3.1x over the Edge TPU, and by 2.4x and 4.3x over Eyeriss~v2, a state-of-the-art accelerator.

Energy-Efficient Mobile Robot Control via Run-time Monitoring of Environmental Complexity and Computing Workload

We propose an energy-efficient controller to minimize the energy consumption of a mobile robot by dynamically manipulating the mechanical and computational actuators of the robot. The mobile robot performs real-time vision-based applications based on an event-based camera. The actuators of the controller are CPU voltage/frequency for the computation part and motor voltage for the mechanical part. We show that independently considering speed control of the robot and voltage/frequency control of the CPU does not necessarily result in an energy-efficient solution. In fact, to obtain the highest efficiency, the computation and mechanical parts should be controlled together in synergy. We propose a fast hill-climbing optimization algorithm to allow the controller to find the best CPU/motor configuration at run-time and whenever the mobile robot is facing a new environment during its travel. Experimental results on a robot with Brushless DC Motors, Jetson TX2 board as the computing unit, and a DAVIS-346 event-based camera show that the proposed control algorithm can save battery energy by an average of 50.5%, 41%, and 30%, in low-complexity, medium-complexity, and high-complexity environments, over baselines.

GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping

At the last step of short read mapping, the candidate locations of the reads on the reference genome are verified to compute their differences from the corresponding reference segments using sequence alignment algorithms. Calculating the similarities and differences between two sequences is still computationally expensive since approximate string matching techniques traditionally inherit dynamic programming algorithms with quadratic time and space complexity. We introduce GateKeeper-GPU, a fast and accurate pre-alignment filter that efficiently reduces the need for expensive sequence alignment. GateKeeper-GPU provides two main contributions: first, improving the filtering accuracy of GateKeeper(state-of-the-art lightweight pre-alignment filter), second, exploiting the massive parallelism provided by the large number of GPU threads of modern GPUs to examine numerous sequence pairs rapidly and concurrently. GateKeeper-GPU accelerates the sequence alignment by up to 2.9x and provides up to 1.4x speedup to the end-to-end execution time of a comprehensive read mapper (mrFAST). GateKeeper-GPU is available at https://github.com/BilkentCompGen/GateKeeper-GPU

GraphMineSuite: Enabling High-Performance and Programmable Graph Mining Algorithms with Set Algebra

We propose GraphMineSuite (GMS): the first benchmarking suite for graph mining that facilitates evaluating and constructing high-performance graph mining algorithms. First, GMS comes with a benchmark specification based on extensive literature review, prescribing representative problems, algorithms, and datasets. Second, GMS offers a carefully designed software platform for seamless testing of different fine-grained elements of graph mining algorithms, such as graph representations or algorithm subroutines. The platform includes parallel implementations of more than 40 considered baselines, and it facilitates developing complex and fast mining algorithms. High modularity is possible by harnessing set algebra operations such as set intersection and difference, which enables breaking complex graph mining algorithms into simple building blocks that can be separately experimented with. GMS is supported with a broad concurrency analysis for portability in performance insights, and a novel performance metric to assess the throughput of graph mining algorithms, enabling more insightful evaluation. As use cases, we harness GMS to rapidly redesign and accelerate state-of-the-art baselines of core graph mining problems: degeneracy reordering (by up to >2x), maximal clique listing (by up to >9x), k-clique listing (by 1.1x), and subgraph isomorphism (by up to 2.5x), also obtaining better theoretical performance bounds.

Mitigating Edge Machine Learning Inference Bottlenecks: An Empirical Study on Accelerating Google Edge Models

As the need for edge computing grows, many modern consumer devices now contain edge machine learning (ML) accelerators that can compute a wide range of neural network (NN) models while still fitting within tight resource constraints. We analyze a commercial Edge TPU using 24 Google edge NN models (including CNNs, LSTMs, transducers, and RCNNs), and find that the accelerator suffers from three shortcomings, in terms of computational throughput, energy efficiency, and memory access handling. We comprehensively study the characteristics of each NN layer in all of the Google edge models, and find that these shortcomings arise from the one-size-fits-all approach of the accelerator, as there is a high amount of heterogeneity in key layer characteristics both across different models and across different layers in the same model. We propose a new acceleration framework called Mensa. Mensa incorporates multiple heterogeneous ML edge accelerators (including both on-chip and near-data accelerators), each of which caters to the characteristics of a particular subset of models. At runtime, Mensa schedules each layer to run on the best-suited accelerator, accounting for both efficiency and inter-layer dependencies. As we analyze the Google edge NN models, we discover that all of the layers naturally group into a small number of clusters, which allows us to design an efficient implementation of Mensa for these models with only three specialized accelerators. Averaged across all 24 Google edge models, Mensa improves energy efficiency and throughput by 3.0x and 3.1x over the Edge TPU, and by 2.4x and 4.3x over Eyeriss v2, a state-of-the-art accelerator.

COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model

Motivation: Early detection and isolation of COVID-19 patients are essential for successful implementation of mitigation strategies and eventually curbing the disease spread. With a limited number of daily COVID19 tests performed in every country, simulating the COVID-19 spread along with the potential effect of each mitigation strategy currently remains one of the most effective ways in managing the healthcare system and guiding policy-makers. We introduce COVIDHunter, a flexible and accurate COVID-19 outbreak simulation model that evaluates the current mitigation measures that are applied to a region and provides suggestions on what strength the upcoming mitigation measure should be. The key idea of COVIDHunter is to quantify the spread of COVID-19 in a geographical region by simulating the average number of new infections caused by an infected person considering the effect of external factors, such as environmental conditions (e.g., climate, temperature, humidity) and mitigation measures. Results: Using Switzerland as a case study, COVIDHunter estimates that the policy-makers need to keep the current mitigation measures for at least 30 days to prevent demand from quickly exceeding existing hospital capacity. Relaxing the mitigation measures by 50% for 30 days increases both the daily capacity need for hospital beds and daily number of deaths exponentially by an average of 23.8x, who may occupy ICU beds and ventilators for a period of time. Unlike existing models, the COVIDHunter model accurately monitors and predicts the daily number of cases, hospitalizations, and deaths due to COVID-19. Our model is flexible to configure and simple to modify for modeling different scenarios under different environmental conditions and mitigation measures. Availability: https://github.com/CMU-SAFARI/COVIDHunter

Robust Machine Learning Systems: Challenges, Current Trends, Perspectives, and the Road Ahead

Machine Learning (ML) techniques have been rapidly adopted by smart Cyber-Physical Systems (CPS) and Internet-of-Things (IoT) due to their powerful decision-making capabilities. However, they are vulnerable to various security and reliability threats, at both hardware and software levels, that compromise their accuracy. These threats get aggravated in emerging edge ML devices that have stringent constraints in terms of resources (e.g., compute, memory, power/energy), and that therefore cannot employ costly security and reliability measures. Security, reliability, and vulnerability mitigation techniques span from network security measures to hardware protection, with an increased interest towards formal verification of trained ML models. This paper summarizes the prominent vulnerabilities of modern ML systems, highlights successful defenses and mitigation techniques against these vulnerabilities, both at the cloud (i.e., during the ML training phase) and edge (i.e., during the ML inference stage), discusses the implications of a resource-constrained design on the reliability and security of the system, identifies verification methodologies to ensure correct system behavior, and describes open research challenges for building secure and reliable ML systems at both the edge and the cloud.