Efficient Attentions for Long Document Summarization

The quadratic computational and memory complexities of large Transformers have limited their scalability for long document summarization. In this paper, we propose Hepos, a novel efficient encoder-decoder attention with head-wise positional strides to effectively pinpoint salient information from the source. We further conduct a systematic study of existing efficient self-attentions. Combined with Hepos, we are able to process ten times more tokens than existing models that use full attentions. For evaluation, we present a new dataset, GovReport, with significantly longer documents and summaries. Results show that our models produce significantly higher ROUGE scores than competitive comparisons, including new state-of-the-art results on PubMed. Human evaluation also shows that our models generate more informative summaries with fewer unfaithful errors.

COVID-19 Literature Knowledge Graph Construction and Drug Repurposing Report Generation

To combat COVID-19, clinicians and scientists all need to digest the vast amount of relevant biomedical knowledge in literature to understand the disease mechanism and the related biological functions. We have developed a novel and comprehensive knowledge discovery framework, COVID-KG, which leverages novel semantic representation and external ontologies to represent text and images in the input literature data, and then performs various extraction components to extract fine-grained multimedia knowledge elements (entities, relations and events). We then exploit the constructed multimedia KGs for question answering and report generation, using drug repurposing as a case study. Our framework also provides detailed contextual sentences, subfigures and knowledge subgraphs as evidence. All of the data, KGs, resources, and shared services are publicly available.