Abstract:Diffusion models have been demonstrated as strong priors for solving general inverse problems. Most existing Diffusion model-based Inverse Problem Solvers (DIS) employ a plug-and-play approach to guide the sampling trajectory with either projections or gradients. Though effective, these methods generally necessitate hundreds of sampling steps, posing a dilemma between inference time and reconstruction quality. In this work, we try to push the boundary of inference steps to 1-2 NFEs while still maintaining high reconstruction quality. To achieve this, we propose to leverage a pretrained distillation of diffusion model, namely consistency model, as the data prior. The key to achieving few-step guidance is to enforce two types of constraints during the sampling process of the consistency model: soft measurement constraint with ControlNet and hard measurement constraint via optimization. Supporting both single-step reconstruction and multistep refinement, the proposed framework further provides a way to trade image quality with additional computational cost. Within comparable NFEs, our method achieves new state-of-the-art in diffusion-based inverse problem solving, showcasing the significant potential of employing prior-based inverse problem solvers for real-world applications. Code is available at: https://github.com/BioMed-AI-Lab-U-Michgan/cosign.
Abstract:In-context learning (ICL) with Large Vision Models (LVMs) presents a promising avenue in medical image segmentation by reducing the reliance on extensive labeling. However, the ICL performance of LVMs highly depends on the choices of visual prompts and suffers from domain shifts. While existing works leveraging LVMs for medical tasks have focused mainly on model-centric approaches like fine-tuning, we study an orthogonal data-centric perspective on how to select good visual prompts to facilitate generalization to medical domain. In this work, we propose a label-efficient in-context medical segmentation method by introducing a novel Meta-driven Visual Prompt Selection mechanism (MVPS), where a prompt retriever obtained from a meta-learning framework actively selects the optimal images as prompts to promote model performance and generalizability. Evaluated on 8 datasets and 4 tasks across 3 medical imaging modalities, our proposed approach demonstrates consistent gains over existing methods under different scenarios, improving both computational and label efficiency. Finally, we show that MVPS is a flexible, finetuning-free module that could be easily plugged into different backbones and combined with other model-centric approaches.
Abstract:Diffusion models face significant challenges when employed for large-scale medical image reconstruction in real practice such as 3D Computed Tomography (CT). Due to the demanding memory, time, and data requirements, it is difficult to train a diffusion model directly on the entire volume of high-dimensional data to obtain an efficient 3D diffusion prior. Existing works utilizing diffusion priors on single 2D image slice with hand-crafted cross-slice regularization would sacrifice the z-axis consistency, which results in severe artifacts along the z-axis. In this work, we propose a novel framework that enables learning the 3D image prior through position-aware 3D-patch diffusion score blending for reconstructing large-scale 3D medical images. To the best of our knowledge, we are the first to utilize a 3D-patch diffusion prior for 3D medical image reconstruction. Extensive experiments on sparse view and limited angle CT reconstruction show that our DiffusionBlend method significantly outperforms previous methods and achieves state-of-the-art performance on real-world CT reconstruction problems with high-dimensional 3D image (i.e., $256 \times 256 \times 500$). Our algorithm also comes with better or comparable computational efficiency than previous state-of-the-art methods.
Abstract:During the acquisition of satellite images, there is generally a trade-off between spatial resolution and temporal resolution (acquisition frequency) due to the onboard sensors of satellite imaging systems. High-resolution satellite images are very important for land crop monitoring, urban planning, wildfire management and a variety of applications. It is a significant yet challenging task to achieve high spatial-temporal resolution in satellite imaging. With the advent of diffusion models, we can now learn strong generative priors to generate realistic satellite images with high resolution, which can be utilized to promote the super-resolution task as well. In this work, we propose a novel diffusion-based fusion algorithm called \textbf{SatDiffMoE} that can take an arbitrary number of sequential low-resolution satellite images at the same location as inputs, and fuse them into one high-resolution reconstructed image with more fine details, by leveraging and fusing the complementary information from different time points. Our algorithm is highly flexible and allows training and inference on arbitrary number of low-resolution images. Experimental results show that our proposed SatDiffMoE method not only achieves superior performance for the satellite image super-resolution tasks on a variety of datasets, but also gets an improved computational efficiency with reduced model parameters, compared with previous methods.
Abstract:Diffusion models can learn strong image priors from underlying data distribution and use them to solve inverse problems, but the training process is computationally expensive and requires lots of data. Such bottlenecks prevent most existing works from being feasible for high-dimensional and high-resolution data such as 3D images. This paper proposes a method to learn an efficient data prior for the entire image by training diffusion models only on patches of images. Specifically, we propose a patch-based position-aware diffusion inverse solver, called PaDIS, where we obtain the score function of the whole image through scores of patches and their positional encoding and utilize this as the prior for solving inverse problems. First of all, we show that this diffusion model achieves an improved memory efficiency and data efficiency while still maintaining the capability to generate entire images via positional encoding. Additionally, the proposed PaDIS model is highly flexible and can be plugged in with different diffusion inverse solvers (DIS). We demonstrate that the proposed PaDIS approach enables solving various inverse problems in both natural and medical image domains, including CT reconstruction, deblurring, and superresolution, given only patch-based priors. Notably, PaDIS outperforms previous DIS methods trained on entire image priors in the case of limited training data, demonstrating the data efficiency of our proposed approach by learning patch-based prior.
Abstract:Vision-language pre-training (VLP) has arised as an efficient scheme for multimodal representation learning, but it requires large-scale multimodal data for pre-training, making it an obstacle especially for biomedical applications. To overcome the data limitation, federated learning (FL) can be a promising strategy to scale up the dataset for biomedical VLP while protecting data privacy. However, client data are often heterogeneous in real-world scenarios, and we observe that local training on heterogeneous client data would distort the multimodal representation learning and lead to biased cross-modal alignment. To address this challenge, we propose Federated distributional Robust Guidance-Based (FedRGB) learning framework for federated VLP with robustness to data heterogeneity. Specifically, we utilize a guidance-based local training scheme to reduce feature distortions, and employ a distribution-based min-max optimization to learn unbiased cross-modal alignment. The experiments on real-world datasets show our method successfully promotes efficient federated multimodal learning for biomedical VLP with data heterogeneity.
Abstract:Precision medicine, such as patient-adaptive treatments utilizing medical images, poses new challenges for image segmentation algorithms due to (1) the large variability across different patients and (2) the limited availability of annotated data for each patient. In this work, we propose a data-efficient segmentation method to address these challenges, namely Part-aware Personalized Segment Anything Model (P^2SAM). Without any model fine-tuning, P^2SAM enables seamless adaptation to any new patients relying only on one-shot patient-specific data. We introduce a novel part-aware prompt mechanism to select multiple-point prompts based on part-level features of the one-shot data. To further promote the robustness of the selected prompt, we propose a retrieval approach to handle outlier prompts. Extensive experiments demonstrate that P^2SAM improves the performance by +8.0% and +2.0% mean Dice score within two patient-specific segmentation settings, and exhibits impressive generality across different application domains, e.g., +6.4% mIoU on the PerSeg benchmark. Code will be released upon acceptance.
Abstract:The collaborative nature of federated learning (FL) poses a major threat in the form of manipulation of local training data and local updates, known as the Byzantine poisoning attack. To address this issue, many Byzantine-robust aggregation rules (AGRs) have been proposed to filter out or moderate suspicious local updates uploaded by Byzantine participants. This paper introduces a novel approach called AGRAMPLIFIER, aiming to simultaneously improve the robustness, fidelity, and efficiency of the existing AGRs. The core idea of AGRAMPLIFIER is to amplify the "morality" of local updates by identifying the most repressive features of each gradient update, which provides a clearer distinction between malicious and benign updates, consequently improving the detection effect. To achieve this objective, two approaches, namely AGRMP and AGRXAI, are proposed. AGRMP organizes local updates into patches and extracts the largest value from each patch, while AGRXAI leverages explainable AI methods to extract the gradient of the most activated features. By equipping AGRAMPLIFIER with the existing Byzantine-robust mechanisms, we successfully enhance the model's robustness, maintaining its fidelity and improving overall efficiency. AGRAMPLIFIER is universally compatible with the existing Byzantine-robust mechanisms. The paper demonstrates its effectiveness by integrating it with all mainstream AGR mechanisms. Extensive evaluations conducted on seven datasets from diverse domains against seven representative poisoning attacks consistently show enhancements in robustness, fidelity, and efficiency, with average gains of 40.08%, 39.18%, and 10.68%, respectively.
Abstract:Recently, diffusion models have emerged as powerful deep generative models, showcasing cutting-edge performance across various applications such as image generation, solving inverse problems, and text-to-image synthesis. These models generate new data (e.g., images) by transforming random noise inputs through a reverse diffusion process. In this work, we uncover a distinct and prevalent phenomenon within diffusion models in contrast to most other generative models, which we refer to as ``consistent model reproducibility''. To elaborate, our extensive experiments have consistently shown that when starting with the same initial noise input and sampling with a deterministic solver, diffusion models tend to produce nearly identical output content. This consistency holds true regardless of the choices of model architectures and training procedures. Additionally, our research has unveiled that this exceptional model reproducibility manifests in two distinct training regimes: (i) ``memorization regime,'' characterized by a significantly overparameterized model which attains reproducibility mainly by memorizing the training data; (ii) ``generalization regime,'' in which the model is trained on an extensive dataset, and its reproducibility emerges with the model's generalization capabilities. Our analysis provides theoretical justification for the model reproducibility in ``memorization regime''. Moreover, our research reveals that this valuable property generalizes to many variants of diffusion models, including conditional diffusion models, diffusion models for solving inverse problems, and fine-tuned diffusion models. A deeper understanding of this phenomenon has the potential to yield more interpretable and controllable data generative processes based on diffusion models.
Abstract:Diffusion models have recently emerged as powerful generative priors for solving inverse problems. However, training diffusion models in the pixel space are both data intensive and computationally demanding, which restricts their applicability as priors in domains such as medical imaging. Latent diffusion models, which operate in a much lower-dimensional space, offer a solution to these challenges. Though, their direct application to solving inverse problems remains an unsolved technical challenge due to the nonlinearity of the encoder and decoder. To address this issue,we propose ReSample, an algorithm that solves general inverse problems with pre-trained latent diffusion models. Our algorithm incorporates data consistency by solving an optimization problem during the reverse sampling process, a concept that we term as hard data consistency. Upon solving this optimization problem, we propose a novel resampling scheme to map the measurement-consistent sample back onto the correct data manifold. Our approach offers both memory efficiency and considerable flexibility in the sense that (1) it can be readily adapted to various inverse problems using the same pre-trained model as it does not assume any fixed forward measurement operator during training, and (2) it can be generalized to different domains by simply fine-tuning the latent diffusion model with a minimal amount of data samples. Our empirical results on both linear and non-linear inverse problems demonstrate that our approach can reconstruct high-quality images even compared to state-of-the-art works that operate in the pixel space.