Generative Pre-Trained Transformer for Symbolic Regression Base In-Context Reinforcement Learning

The mathematical formula is the human language to describe nature and is the essence of scientific research. Finding mathematical formulas from observational data is a major demand of scientific research and a major challenge of artificial intelligence. This area is called symbolic regression. Originally symbolic regression was often formulated as a combinatorial optimization problem and solved using GP or reinforcement learning algorithms. These two kinds of algorithms have strong noise robustness ability and good Versatility. However, inference time usually takes a long time, so the search efficiency is relatively low. Later, based on large-scale pre-training data proposed, such methods use a large number of synthetic data points and expression pairs to train a Generative Pre-Trained Transformer(GPT). Then this GPT can only need to perform one forward propagation to obtain the results, the advantage is that the inference speed is very fast. However, its performance is very dependent on the training data and performs poorly on data outside the training set, which leads to poor noise robustness and Versatility of such methods. So, can we combine the advantages of the above two categories of SR algorithms? In this paper, we propose \textbf{FormulaGPT}, which trains a GPT using massive sparse reward learning histories of reinforcement learning-based SR algorithms as training data. After training, the SR algorithm based on reinforcement learning is distilled into a Transformer. When new test data comes, FormulaGPT can directly generate a "reinforcement learning process" and automatically update the learning policy in context. Tested on more than ten datasets including SRBench, formulaGPT achieves the state-of-the-art performance in fitting ability compared with four baselines. In addition, it achieves satisfactory results in noise robustness, versatility, and inference efficiency.

MMSR: Symbolic Regression is a Multimodal Task

Mathematical formulas are the crystallization of human wisdom in exploring the laws of nature for thousands of years. Describing the complex laws of nature with a concise mathematical formula is a constant pursuit of scientists and a great challenge for artificial intelligence. This field is called symbolic regression. Symbolic regression was originally formulated as a combinatorial optimization problem, and GP and reinforcement learning algorithms were used to solve it. However, GP is sensitive to hyperparameters, and these two types of algorithms are inefficient. To solve this problem, researchers treat the mapping from data to expressions as a translation problem. And the corresponding large-scale pre-trained model is introduced. However, the data and expression skeletons do not have very clear word correspondences as the two languages do. Instead, they are more like two modalities (e.g., image and text). Therefore, in this paper, we proposed MMSR. The SR problem is solved as a pure multimodal problem, and contrastive learning is also introduced in the training process for modal alignment to facilitate later modal feature fusion. It is worth noting that in order to better promote the modal feature fusion, we adopt the strategy of training contrastive learning loss and other losses at the same time, which only needs one-step training, instead of training contrastive learning loss first and then training other losses. Because our experiments prove training together can make the feature extraction module and feature fusion module running-in better. Experimental results show that compared with multiple large-scale pre-training baselines, MMSR achieves the most advanced results on multiple mainstream datasets including SRBench.

Discovering Mathematical Formulas from Data via GPT-guided Monte Carlo Tree Search

Finding a concise and interpretable mathematical formula that accurately describes the relationship between each variable and the predicted value in the data is a crucial task in scientific research, as well as a significant challenge in artificial intelligence. This problem is referred to as symbolic regression, which is an NP-hard problem. In the previous year, a novel symbolic regression methodology utilizing Monte Carlo Tree Search (MCTS) was advanced, achieving state-of-the-art results on a diverse range of datasets. although this algorithm has shown considerable improvement in recovering target expressions compared to previous methods, the lack of guidance during the MCTS process severely hampers its search efficiency. Recently, some algorithms have added a pre-trained policy network to guide the search of MCTS, but the pre-trained policy network generalizes poorly. To optimize the trade-off between efficiency and versatility, we introduce SR-GPT, a novel algorithm for symbolic regression that integrates Monte Carlo Tree Search (MCTS) with a Generative Pre-Trained Transformer (GPT). By using GPT to guide the MCTS, the search efficiency of MCTS is significantly improved. Next, we utilize the MCTS results to further refine the GPT, enhancing its capabilities and providing more accurate guidance for the MCTS. MCTS and GPT are coupled together and optimize each other until the target expression is successfully determined. We conducted extensive evaluations of SR-GPT using 222 expressions sourced from over 10 different symbolic regression datasets. The experimental results demonstrate that SR-GPT outperforms existing state-of-the-art algorithms in accurately recovering symbolic expressions both with and without added noise.

PruneSymNet: A Symbolic Neural Network and Pruning Algorithm for Symbolic Regression

Symbolic regression aims to derive interpretable symbolic expressions from data in order to better understand and interpret data. %which plays an important role in knowledge discovery and interpretable machine learning. In this study, a symbolic network called PruneSymNet is proposed for symbolic regression. This is a novel neural network whose activation function consists of common elementary functions and operators. The whole network is differentiable and can be trained by gradient descent method. Each subnetwork in the network corresponds to an expression, and our goal is to extract such subnetworks to get the desired symbolic expression. Therefore, a greedy pruning algorithm is proposed to prune the network into a subnetwork while ensuring the accuracy of data fitting. The proposed greedy pruning algorithm preserves the edge with the least loss in each pruning, but greedy algorithm often can not get the optimal solution. In order to alleviate this problem, we combine beam search during pruning to obtain multiple candidate expressions each time, and finally select the expression with the smallest loss as the final result. It was tested on the public data set and compared with the current popular algorithms. The results showed that the proposed algorithm had better accuracy.

A Neural-Guided Dynamic Symbolic Network for Exploring Mathematical Expressions from Data

Symbolic regression (SR) is a powerful technique for discovering the underlying mathematical expressions from observed data. Inspired by the success of deep learning, recent efforts have focused on two categories for SR methods. One is using a neural network or genetic programming to search the expression tree directly. Although this has shown promising results, the large search space poses difficulties in learning constant factors and processing high-dimensional problems. Another approach is leveraging a transformer-based model training on synthetic data and offers advantages in inference speed. However, this method is limited to fixed small numbers of dimensions and may encounter inference problems when given data is out-of-distribution compared to the synthetic data. In this work, we propose DySymNet, a novel neural-guided Dynamic Symbolic Network for SR. Instead of searching for expressions within a large search space, we explore DySymNet with various structures and optimize them to identify expressions that better-fitting the data. With a topology structure like neural networks, DySymNet not only tackles the challenge of high-dimensional problems but also proves effective in optimizing constants. Based on extensive numerical experiments using low-dimensional public standard benchmarks and the well-known SRBench with more variables, our method achieves state-of-the-art performance in terms of fitting accuracy and robustness to noise.

Enhancing Contrastive Learning with Noise-Guided Attack: Towards Continual Relation Extraction in the Wild

The principle of continual relation extraction~(CRE) involves adapting to emerging novel relations while preserving od knowledge. While current endeavors in CRE succeed in preserving old knowledge, they tend to fail when exposed to contaminated data streams. We assume this is attributed to their reliance on an artificial hypothesis that the data stream has no annotation errors, which hinders real-world applications for CRE. Considering the ubiquity of noisy labels in real-world datasets, in this paper, we formalize a more practical learning scenario, termed as \textit{noisy-CRE}. Building upon this challenging setting, we develop a noise-resistant contrastive framework named as \textbf{N}oise-guided \textbf{a}ttack in \textbf{C}ontrative \textbf{L}earning~(NaCL) to learn incremental corrupted relations. Compared to direct noise discarding or inaccessible noise relabeling, we present modifying the feature space to match the given noisy labels via attacking can better enrich contrastive representations. Extensive empirical validations highlight that NaCL can achieve consistent performance improvements with increasing noise rates, outperforming state-of-the-art baselines.

Trichomonas Vaginalis Segmentation in Microscope Images

Trichomoniasis is a common infectious disease with high incidence caused by the parasite Trichomonas vaginalis, increasing the risk of getting HIV in humans if left untreated. Automated detection of Trichomonas vaginalis from microscopic images can provide vital information for the diagnosis of trichomoniasis. However, accurate Trichomonas vaginalis segmentation (TVS) is a challenging task due to the high appearance similarity between the Trichomonas and other cells (e.g., leukocyte), the large appearance variation caused by their motility, and, most importantly, the lack of large-scale annotated data for deep model training. To address these challenges, we elaborately collected the first large-scale Microscopic Image dataset of Trichomonas Vaginalis, named TVMI3K, which consists of 3,158 images covering Trichomonas of various appearances in diverse backgrounds, with high-quality annotations including object-level mask labels, object boundaries, and challenging attributes. Besides, we propose a simple yet effective baseline, termed TVNet, to automatically segment Trichomonas from microscopic images, including high-resolution fusion and foreground-background attention modules. Extensive experiments demonstrate that our model achieves superior segmentation performance and outperforms various cutting-edge object detection models both quantitatively and qualitatively, making it a promising framework to promote future research in TVS tasks. The dataset and results will be publicly available at: https://github.com/CellRecog/cellRecog.

Implementation of an Automated Learning System for Non-experts

Automated machine learning systems for non-experts could be critical for industries to adopt artificial intelligence to their own applications. This paper detailed the engineering system implementation of an automated machine learning system called YMIR, which completely relies on graphical interface to interact with users. After importing training/validation data into the system, a user without AI knowledge can label the data, train models, perform data mining and evaluation by simply clicking buttons. The paper described: 1) Open implementation of model training and inference through docker containers. 2) Implementation of task and resource management. 3) Integration of Labeling software. 4) Implementation of HCI (Human Computer Interaction) with a rebuilt collaborative development paradigm. We also provide subsequent case study on training models with the system. We hope this paper can facilitate the prosperity of our automated machine learning community from industry application perspective. The code of the system has already been released to GitHub (https://github.com/industryessentials/ymir).