Provably Neural Active Learning Succeeds via Prioritizing Perplexing Samples

Neural Network-based active learning (NAL) is a cost-effective data selection technique that utilizes neural networks to select and train on a small subset of samples. While existing work successfully develops various effective or theory-justified NAL algorithms, the understanding of the two commonly used query criteria of NAL: uncertainty-based and diversity-based, remains in its infancy. In this work, we try to move one step forward by offering a unified explanation for the success of both query criteria-based NAL from a feature learning view. Specifically, we consider a feature-noise data model comprising easy-to-learn or hard-to-learn features disrupted by noise, and conduct analysis over 2-layer NN-based NALs in the pool-based scenario. We provably show that both uncertainty-based and diversity-based NAL are inherently amenable to one and the same principle, i.e., striving to prioritize samples that contain yet-to-be-learned features. We further prove that this shared principle is the key to their success-achieve small test error within a small labeled set. Contrastingly, the strategy-free passive learning exhibits a large test error due to the inadequate learning of yet-to-be-learned features, necessitating resort to a significantly larger label complexity for a sufficient test error reduction. Experimental results validate our findings.

Towards a Mathematical Foundation of Immunology and Amino Acid Chains

We attempt to set a mathematical foundation of immunology and amino acid chains. To measure the similarities of these chains, a kernel on strings is defined using only the sequence of the chains and a good amino acid substitution matrix (e.g. BLOSUM62). The kernel is used in learning machines to predict binding affinities of peptides to human leukocyte antigens DR (HLA-DR) molecules. On both fixed allele (Nielsen and Lund 2009) and pan-allele (Nielsen et.al. 2010) benchmark databases, our algorithm achieves the state-of-the-art performance. The kernel is also used to define a distance on an HLA-DR allele set based on which a clustering analysis precisely recovers the serotype classifications assigned by WHO (Nielsen and Lund 2009, and Marsh et.al. 2010). These results suggest that our kernel relates well the chain structure of both peptides and HLA-DR molecules to their biological functions, and that it offers a simple, powerful and promising methodology to immunology and amino acid chain studies.