DiffUNet^2: Bidirectional Prediction, Probabilistic Generation and Collaborative Visual Discovery for Scientific Data

Modeling temporal evolution is important to analyzing and reasoning about scientific phenomena, yet most machine learning methods provide deterministic forward predictions that overlook multiple plausible outcomes and rarely support backward reasoning, limiting their usefulness in practical scientific workflows. We present a framework that integrates diffusion-based generative modeling with interactive visual analytics for scientific exploration. We introduce DiffUNet^2, a conditional diffusion model that enables bidirectional, any-to-any generation across time and captures distributions of plausible system evolutions. Built upon the model, our interactive system supports branching timeline exploration, user-guided state editing, and probability-space navigation, enabling scientists to actively explore alternative hypotheses rather than passively observe predictions. We evaluate the model on 5 datasets across different scientific domains to validate its predictive accuracy and probability-space ensemble quality. In collaboration with domain experts, we demonstrate the effectiveness of our approach in supporting practical scientific temporal data analysis workflows. By integrating modeling and visual interaction, our approach enables scientists to interactively explore system dynamics, transforming generative models into tools for hypothesis-driven scientific analysis.

Do Physics Foundation Models Learn Generalizable Physics? A Bias-Aware Benchmark Across Physical Regimes and Distribution Shifts

Recent physics foundation models claim general spatiotemporal forecasting ability, yet their evaluations often collapse performance into a single average score under a fixed training distribution. This makes it difficult to determine whether a model has learned generalizable physical dynamics or only performs well under particular settings. We construct a benchmark with 8 physical dynamics, 3 training-data mixtures, and 25 test regimes induced by dynamic-scale and initial-condition complexity shifts, covering in-distribution, distribution-shift, and out-of-distribution settings. We evaluate five physics foundation model architectures and four model variants per architecture (scratch and three pretrained sizes), resulting in 60,000 measurements. Our results show that current physics foundation models behave as conditional rather than universal generalists: their generality depends on the physical regime, temporal scale, initial-condition setting, pretraining, model size, and architecture. Improving the training data distribution only partially mitigates this limitation. Pretraining and scaling are also unable to reliably remove their ability biases. We argue that improving physics foundation models requires moving beyond scaling models or expanding data, toward learning mechanisms that better capture transferable physical knowledge across regimes, temporal scales, and distribution shifts.

GS-Surrogate: Deformable Gaussian Splatting for Parameter Space Exploration of Ensemble Simulations

Exploring ensemble simulations is increasingly important across many scientific domains. However, supporting flexible post-hoc exploration remains challenging due to the trade-off between storing the expensive raw data and flexibly adjusting visualization settings. Existing visualization surrogate models have improved this workflow, but they either operate in image space without an explicit 3D representation or rely on neural radiance fields that are computationally expensive for interactive exploration and encode all parameter-driven variations within a single implicit field. In this work, we introduce GS-Surrogate, a deformable Gaussian Splatting-based visualization surrogate for parameter-space exploration. Our method first constructs a canonical Gaussian field as a base 3D representation and adapts it through sequential parameter-conditioned deformations. By separating simulation-related variations from visualization-specific changes, this explicit formulation enables efficient and controllable adaptation to different visualization tasks, such as isosurface extraction and transfer function editing. We evaluate our framework on a range of simulation datasets, demonstrating that GS-Surrogate enables real-time and flexible exploration across both simulation and visualization parameter spaces.

Beauty in the Eye of AI: Aligning LLMs and Vision Models with Human Aesthetics in Network Visualization

Network visualization has traditionally relied on heuristic metrics, such as stress, under the assumption that optimizing them leads to aesthetic and informative layouts. However, no single metric consistently produces the most effective results. A data-driven alternative is to learn from human preferences, where annotators select their favored visualization among multiple layouts of the same graphs. These human-preference labels can then be used to train a generative model that approximates human aesthetic preferences. However, obtaining human labels at scale is costly and time-consuming. As a result, this generative approach has so far been tested only with machine-labeled data. In this paper, we explore the use of large language models (LLMs) and vision models (VMs) as proxies for human judgment. Through a carefully designed user study involving 27 participants, we curated a large set of human preference labels. We used this data both to better understand human preferences and to bootstrap LLM/VM labelers. We show that prompt engineering that combines few-shot examples and diverse input formats, such as image embeddings, significantly improves LLM-human alignment, and additional filtering by the confidence score of the LLM pushes the alignment to human-human levels. Furthermore, we demonstrate that carefully trained VMs can achieve VM-human alignment at a level comparable to that between human annotators. Our results suggest that AI can feasibly serve as a scalable proxy for human labelers.

Refine Now, Query Fast: A Decoupled Refinement Paradigm for Implicit Neural Fields

Implicit Neural Representations (INRs) have emerged as promising surrogates for large 3D scientific simulations due to their ability to continuously model spatial and conditional fields, yet they face a critical fidelity-speed dilemma: deep MLPs suffer from high inference cost, while efficient embedding-based models lack sufficient expressiveness. To resolve this, we propose the Decoupled Representation Refinement (DRR) architectural paradigm. DRR leverages a deep refiner network, alongside non-parametric transformations, in a one-time offline process to encode rich representations into a compact and efficient embedding structure. This approach decouples slow neural networks with high representational capacity from the fast inference path. We introduce DRR-Net, a simple network that validates this paradigm, and a novel data augmentation strategy, Variational Pairs (VP) for improving INRs under complex tasks like high-dimensional surrogate modeling. Experiments on several ensemble simulation datasets demonstrate that our approach achieves state-of-the-art fidelity, while being up to 27$\times$ faster at inference than high-fidelity baselines and remaining competitive with the fastest models. The DRR paradigm offers an effective strategy for building powerful and practical neural field surrogates and \rev{INRs in broader applications}, with a minimal compromise between speed and quality.

Efficient Level-Crossing Probability Calculation for Gaussian Process Modeled Data

Almost all scientific data have uncertainties originating from different sources. Gaussian process regression (GPR) models are a natural way to model data with Gaussian-distributed uncertainties. GPR also has the benefit of reducing I/O bandwidth and storage requirements for large scientific simulations. However, the reconstruction from the GPR models suffers from high computation complexity. To make the situation worse, classic approaches for visualizing the data uncertainties, like probabilistic marching cubes, are also computationally very expensive, especially for data of high resolutions. In this paper, we accelerate the level-crossing probability calculation efficiency on GPR models by subdividing the data spatially into a hierarchical data structure and only reconstructing values adaptively in the regions that have a non-zero probability. For each region, leveraging the known GPR kernel and the saved data observations, we propose a novel approach to efficiently calculate an upper bound for the level-crossing probability inside the region and use this upper bound to make the subdivision and reconstruction decisions. We demonstrate that our value occurrence probability estimation is accurate with a low computation cost by experiments that calculate the level-crossing probability fields on different datasets.

High-Fidelity Scientific Simulation Surrogates via Adaptive Implicit Neural Representations

Effective surrogate models are critical for accelerating scientific simulations. Implicit neural representations (INRs) offer a compact and continuous framework for modeling spatially structured data, but they often struggle with complex scientific fields exhibiting localized, high-frequency variations. Recent approaches address this by introducing additional features along rigid geometric structures (e.g., grids), but at the cost of flexibility and increased model size. In this paper, we propose a simple yet effective alternative: Feature-Adaptive INR (FA-INR). FA-INR leverages cross-attention to an augmented memory bank to learn flexible feature representations, enabling adaptive allocation of model capacity based on data characteristics, rather than rigid structural assumptions. To further improve scalability, we introduce a coordinate-guided mixture of experts (MoE) that enhances the specialization and efficiency of feature representations. Experiments on three large-scale ensemble simulation datasets show that FA-INR achieves state-of-the-art fidelity while significantly reducing model size, establishing a new trade-off frontier between accuracy and compactness for INR-based surrogates.

Completing A Systematic Review in Hours instead of Months with Interactive AI Agents

Systematic reviews (SRs) are vital for evidence-based practice in high stakes disciplines, such as healthcare, but are often impeded by intensive labors and lengthy processes that can take months to complete. Due to the high demand for domain expertise, existing automatic summarization methods fail to accurately identify relevant studies and generate high-quality summaries. To that end, we introduce InsightAgent, a human-centered interactive AI agent powered by large language models that revolutionize this workflow. InsightAgent partitions a large literature corpus based on semantics and employs a multi-agent design for more focused processing of literature, leading to significant improvement in the quality of generated SRs. InsightAgent also provides intuitive visualizations of the corpus and agent trajectories, allowing users to effortlessly monitor the actions of the agent and provide real-time feedback based on their expertise. Our user studies with 9 medical professionals demonstrate that the visualization and interaction mechanisms can effectively improve the quality of synthesized SRs by 27.2%, reaching 79.7% of human-written quality. At the same time, user satisfaction is improved by 34.4%. With InsightAgent, it only takes a clinician about 1.5 hours, rather than months, to complete a high-quality systematic review.

Explorable INR: An Implicit Neural Representation for Ensemble Simulation Enabling Efficient Spatial and Parameter Exploration

With the growing computational power available for high-resolution ensemble simulations in scientific fields such as cosmology and oceanology, storage and computational demands present significant challenges. Current surrogate models fall short in the flexibility of point- or region-based predictions as the entire field reconstruction is required for each parameter setting, hence hindering the efficiency of parameter space exploration. Limitations exist in capturing physical attribute distributions and pinpointing optimal parameter configurations. In this work, we propose Explorable INR, a novel implicit neural representation-based surrogate model, designed to facilitate exploration and allow point-based spatial queries without computing full-scale field data. In addition, to further address computational bottlenecks of spatial exploration, we utilize probabilistic affine forms (PAFs) for uncertainty propagation through Explorable INR to obtain statistical summaries, facilitating various ensemble analysis and visualization tasks that are expensive with existing models. Furthermore, we reformulate the parameter exploration problem as optimization tasks using gradient descent and KL divergence minimization that ensures scalability. We demonstrate that the Explorable INR with the proposed approach for spatial and parameter exploration can significantly reduce computation and memory costs while providing effective ensemble analysis.

FedNE: Surrogate-Assisted Federated Neighbor Embedding for Dimensionality Reduction

Federated learning (FL) has rapidly evolved as a promising paradigm that enables collaborative model training across distributed participants without exchanging their local data. Despite its broad applications in fields such as computer vision, graph learning, and natural language processing, the development of a data projection model that can be effectively used to visualize data in the context of FL is crucial yet remains heavily under-explored. Neighbor embedding (NE) is an essential technique for visualizing complex high-dimensional data, but collaboratively learning a joint NE model is difficult. The key challenge lies in the objective function, as effective visualization algorithms like NE require computing loss functions among pairs of data. In this paper, we introduce \textsc{FedNE}, a novel approach that integrates the \textsc{FedAvg} framework with the contrastive NE technique, without any requirements of shareable data. To address the lack of inter-client repulsion which is crucial for the alignment in the global embedding space, we develop a surrogate loss function that each client learns and shares with each other. Additionally, we propose a data-mixing strategy to augment the local data, aiming to relax the problems of invisible neighbors and false neighbors constructed by the local $k$NN graphs. We conduct comprehensive experiments on both synthetic and real-world datasets. The results demonstrate that our \textsc{FedNE} can effectively preserve the neighborhood data structures and enhance the alignment in the global embedding space compared to several baseline methods.