Behavior-Specific Filtering for Enhanced Pig Behavior Classification in Precision Livestock Farming

This study proposes a behavior-specific filtering method to improve behavior classification accuracy in Precision Livestock Farming. While traditional filtering methods, such as wavelet denoising, achieved an accuracy of 91.58%, they apply uniform processing to all behaviors. In contrast, the proposed behavior-specific filtering method combines Wavelet Denoising with a Low Pass Filter, tailored to active and inactive pig behaviors, and achieved a peak accuracy of 94.73%. These results highlight the effectiveness of behavior-specific filtering in enhancing animal behavior monitoring, supporting better health management and farm efficiency.

Predicting Dairy Calf Body Weight from Depth Images Using Deep Learning (YOLOv8) and Threshold Segmentation with Cross-Validation and Longitudinal Analysis

Monitoring calf body weight (BW) before weaning is essential for assessing growth, feed efficiency, health, and weaning readiness. However, labor, time, and facility constraints limit BW collection. Additionally, Holstein calf coat patterns complicate image-based BW estimation, and few studies have explored non-contact measurements taken at early time points for predicting later BW. The objectives of this study were to (1) develop deep learning-based segmentation models for extracting calf body metrics, (2) compare deep learning segmentation with threshold-based methods, and (3) evaluate BW prediction using single-time-point cross-validation with linear regression (LR) and extreme gradient boosting (XGBoost) and multiple-time-point cross-validation with LR, XGBoost, and a linear mixed model (LMM). Depth images from Holstein (n = 63) and Jersey (n = 5) pre-weaning calves were collected, with 20 Holstein calves being weighed manually. Results showed that You Only Look Once version 8 (YOLOv8) deep learning segmentation (intersection over union = 0.98) outperformed threshold-based methods (0.89). In single-time-point cross-validation, XGBoost achieved the best BW prediction (R^2 = 0.91, mean absolute percentage error (MAPE) = 4.37%), while LMM provided the most accurate longitudinal BW prediction (R^2 = 0.99, MAPE = 2.39%). These findings highlight the potential of deep learning for automated BW prediction, enhancing farm management.

Technical note: ShinyAnimalCV: open-source cloud-based web application for object detection, segmentation, and three-dimensional visualization of animals using computer vision

Computer vision (CV), a non-intrusive and cost-effective technology, has furthered the development of precision livestock farming by enabling optimized decision-making through timely and individualized animal care. The availability of affordable two- and three-dimensional camera sensors, combined with various machine learning and deep learning algorithms, has provided a valuable opportunity to improve livestock production systems. However, despite the availability of various CV tools in the public domain, applying these tools to animal data can be challenging, often requiring users to have programming and data analysis skills, as well as access to computing resources. Moreover, the rapid expansion of precision livestock farming is creating a growing need to educate and train animal science students in CV. This presents educators with the challenge of efficiently demonstrating the complex algorithms involved in CV. Thus, the objective of this study was to develop ShinyAnimalCV, an open-source cloud-based web application. This application provides a user-friendly interface for performing CV tasks, including object segmentation, detection, three-dimensional surface visualization, and extraction of two- and three-dimensional morphological features. Nine pre-trained CV models using top-view animal data are included in the application. ShinyAnimalCV has been deployed online using cloud computing platforms. The source code of ShinyAnimalCV is available on GitHub, along with detailed documentation on training CV models using custom data and deploying ShinyAnimalCV locally to allow users to fully leverage the capabilities of the application. ShinyAnimalCV can contribute to CV research and teaching in the animal science community.

Depth video data-enabled predictions of longitudinal dairy cow body weight using thresholding and Mask R-CNN algorithms

Monitoring cow body weight is crucial to support farm management decisions due to its direct relationship with the growth, nutritional status, and health of dairy cows. Cow body weight is a repeated trait, however, the majority of previous body weight prediction research only used data collected at a single point in time. Furthermore, the utility of deep learning-based segmentation for body weight prediction using videos remains unanswered. Therefore, the objectives of this study were to predict cow body weight from repeatedly measured video data, to compare the performance of the thresholding and Mask R-CNN deep learning approaches, to evaluate the predictive ability of body weight regression models, and to promote open science in the animal science community by releasing the source code for video-based body weight prediction. A total of 40,405 depth images and depth map files were obtained from 10 lactating Holstein cows and 2 non-lactating Jersey cows. Three approaches were investigated to segment the cow's body from the background, including single thresholding, adaptive thresholding, and Mask R-CNN. Four image-derived biometric features, such as dorsal length, abdominal width, height, and volume, were estimated from the segmented images. On average, the Mask-RCNN approach combined with a linear mixed model resulted in the best prediction coefficient of determination and mean absolute percentage error of 0.98 and 2.03%, respectively, in the forecasting cross-validation. The Mask-RCNN approach was also the best in the leave-three-cows-out cross-validation. The prediction coefficients of determination and mean absolute percentage error of the Mask-RCNN coupled with the linear mixed model were 0.90 and 4.70%, respectively. Our results suggest that deep learning-based segmentation improves the prediction performance of cow body weight from longitudinal depth video data.