Few-shot adaptation for morphology-independent cell instance segmentation

Microscopy data collections are becoming larger and more frequent. Accurate and precise quantitative analysis tools like cell instance segmentation are necessary to benefit from them. This is challenging due to the variability in the data, which requires retraining the segmentation model to maintain high accuracy on new collections. This is needed especially for segmenting cells with elongated and non-convex morphology like bacteria. We propose to reduce the amount of annotation and computing power needed for retraining the model by introducing a few-shot domain adaptation approach that requires annotating only one to five cells of the new data to process and that quickly adapts the model to maintain high accuracy. Our results show a significant boost in accuracy after adaptation to very challenging bacteria datasets.

Current Topological and Machine Learning Applications for Bias Detection in Text

Institutional bias can impact patient outcomes, educational attainment, and legal system navigation. Written records often reflect bias, and once bias is identified; it is possible to refer individuals for training to reduce bias. Many machine learning tools exist to explore text data and create predictive models that can search written records to identify real-time bias. However, few previous studies investigate large language model embeddings and geometric models of biased text data to understand geometry's impact on bias modeling accuracy. To overcome this issue, this study utilizes the RedditBias database to analyze textual biases. Four transformer models, including BERT and RoBERTa variants, were explored. Post-embedding, t-SNE allowed two-dimensional visualization of data. KNN classifiers differentiated bias types, with lower k-values proving more effective. Findings suggest BERT, particularly mini BERT, excels in bias classification, while multilingual models lag. The recommendation emphasizes refining monolingual models and exploring domain-specific biases.

ZEETAD: Adapting Pretrained Vision-Language Model for Zero-Shot End-to-End Temporal Action Detection

Temporal action detection (TAD) involves the localization and classification of action instances within untrimmed videos. While standard TAD follows fully supervised learning with closed-set setting on large training data, recent zero-shot TAD methods showcase the promising open-set setting by leveraging large-scale contrastive visual-language (ViL) pretrained models. However, existing zero-shot TAD methods have limitations on how to properly construct the strong relationship between two interdependent tasks of localization and classification and adapt ViL model to video understanding. In this work, we present ZEETAD, featuring two modules: dual-localization and zero-shot proposal classification. The former is a Transformer-based module that detects action events while selectively collecting crucial semantic embeddings for later recognition. The latter one, CLIP-based module, generates semantic embeddings from text and frame inputs for each temporal unit. Additionally, we enhance discriminative capability on unseen classes by minimally updating the frozen CLIP encoder with lightweight adapters. Extensive experiments on THUMOS14 and ActivityNet-1.3 datasets demonstrate our approach's superior performance in zero-shot TAD and effective knowledge transfer from ViL models to unseen action categories.

Open-Fusion: Real-time Open-Vocabulary 3D Mapping and Queryable Scene Representation

Precise 3D environmental mapping is pivotal in robotics. Existing methods often rely on predefined concepts during training or are time-intensive when generating semantic maps. This paper presents Open-Fusion, a groundbreaking approach for real-time open-vocabulary 3D mapping and queryable scene representation using RGB-D data. Open-Fusion harnesses the power of a pre-trained vision-language foundation model (VLFM) for open-set semantic comprehension and employs the Truncated Signed Distance Function (TSDF) for swift 3D scene reconstruction. By leveraging the VLFM, we extract region-based embeddings and their associated confidence maps. These are then integrated with 3D knowledge from TSDF using an enhanced Hungarian-based feature-matching mechanism. Notably, Open-Fusion delivers outstanding annotation-free 3D segmentation for open-vocabulary without necessitating additional 3D training. Benchmark tests on the ScanNet dataset against leading zero-shot methods highlight Open-Fusion's superiority. Furthermore, it seamlessly combines the strengths of region-based VLFM and TSDF, facilitating real-time 3D scene comprehension that includes object concepts and open-world semantics. We encourage the readers to view the demos on our project page: https://uark-aicv.github.io/OpenFusion

Distributionally Robust Cross Subject EEG Decoding

Recently, deep learning has shown to be effective for Electroencephalography (EEG) decoding tasks. Yet, its performance can be negatively influenced by two key factors: 1) the high variance and different types of corruption that are inherent in the signal, 2) the EEG datasets are usually relatively small given the acquisition cost, annotation cost and amount of effort needed. Data augmentation approaches for alleviation of this problem have been empirically studied, with augmentation operations on spatial domain, time domain or frequency domain handcrafted based on expertise of domain knowledge. In this work, we propose a principled approach to perform dynamic evolution on the data for improvement of decoding robustness. The approach is based on distributionally robust optimization and achieves robustness by optimizing on a family of evolved data distributions instead of the single training data distribution. We derived a general data evolution framework based on Wasserstein gradient flow (WGF) and provides two different forms of evolution within the framework. Intuitively, the evolution process helps the EEG decoder to learn more robust and diverse features. It is worth mentioning that the proposed approach can be readily integrated with other data augmentation approaches for further improvements. We performed extensive experiments on the proposed approach and tested its performance on different types of corrupted EEG signals. The model significantly outperforms competitive baselines on challenging decoding scenarios.

ChatGPT in the Age of Generative AI and Large Language Models: A Concise Survey

ChatGPT is a large language model (LLM) created by OpenAI that has been carefully trained on a large amount of data. It has revolutionized the field of natural language processing (NLP) and has pushed the boundaries of LLM capabilities. ChatGPT has played a pivotal role in enabling widespread public interaction with generative artificial intelligence (GAI) on a large scale. It has also sparked research interest in developing similar technologies and investigating their applications and implications. In this paper, our primary goal is to provide a concise survey on the current lines of research on ChatGPT and its evolution. We considered both the glass box and black box views of ChatGPT, encompassing the components and foundational elements of the technology, as well as its applications, impacts, and implications. The glass box approach focuses on understanding the inner workings of the technology, and the black box approach embraces it as a complex system, and thus examines its inputs, outputs, and effects. This paves the way for a comprehensive exploration of the technology and provides a road map for further research and experimentation. We also lay out essential foundational literature on LLMs and GAI in general and their connection with ChatGPT. This overview sheds light on existing and missing research lines in the emerging field of LLMs, benefiting both public users and developers. Furthermore, the paper delves into the broad spectrum of applications and significant concerns in fields such as education, research, healthcare, finance, etc.

More Synergy, Less Redundancy: Exploiting Joint Mutual Information for Self-Supervised Learning

Self-supervised learning (SSL) is now a serious competitor for supervised learning, even though it does not require data annotation. Several baselines have attempted to make SSL models exploit information about data distribution, and less dependent on the augmentation effect. However, there is no clear consensus on whether maximizing or minimizing the mutual information between representations of augmentation views practically contribute to improvement or degradation in performance of SSL models. This paper is a fundamental work where, we investigate role of mutual information in SSL, and reformulate the problem of SSL in the context of a new perspective on mutual information. To this end, we consider joint mutual information from the perspective of partial information decomposition (PID) as a key step in \textbf{reliable multivariate information measurement}. PID enables us to decompose joint mutual information into three important components, namely, unique information, redundant information and synergistic information. Our framework aims for minimizing the redundant information between views and the desired target representation while maximizing the synergistic information at the same time. Our experiments lead to a re-calibration of two redundancy reduction baselines, and a proposal for a new SSL training protocol. Extensive experimental results on multiple datasets and two downstream tasks show the effectiveness of this framework.

A Robust Likelihood Model for Novelty Detection

Current approaches to novelty or anomaly detection are based on deep neural networks. Despite their effectiveness, neural networks are also vulnerable to imperceptible deformations of the input data. This is a serious issue in critical applications, or when data alterations are generated by an adversarial attack. While this is a known problem that has been studied in recent years for the case of supervised learning, the case of novelty detection has received very limited attention. Indeed, in this latter setting the learning is typically unsupervised because outlier data is not available during training, and new approaches for this case need to be investigated. We propose a new prior that aims at learning a robust likelihood for the novelty test, as a defense against attacks. We also integrate the same prior with a state-of-the-art novelty detection approach. Because of the geometric properties of that approach, the resulting robust training is computationally very efficient. An initial evaluation of the method indicates that it is effective at improving performance with respect to the standard models in the absence and presence of attacks.

Self-supervised Interest Point Detection and Description for Fisheye and Perspective Images

Keypoint detection and matching is a fundamental task in many computer vision problems, from shape reconstruction, to structure from motion, to AR/VR applications and robotics. It is a well-studied problem with remarkable successes such as SIFT, and more recent deep learning approaches. While great robustness is exhibited by these techniques with respect to noise, illumination variation, and rigid motion transformations, less attention has been placed on image distortion sensitivity. In this work, we focus on the case when this is caused by the geometry of the cameras used for image acquisition, and consider the keypoint detection and matching problem between the hybrid scenario of a fisheye and a projective image. We build on a state-of-the-art approach and derive a self-supervised procedure that enables training an interest point detector and descriptor network. We also collected two new datasets for additional training and testing in this unexplored scenario, and we demonstrate that current approaches are suboptimal because they are designed to work in traditional projective conditions, while the proposed approach turns out to be the most effective.

CellTranspose: Few-shot Domain Adaptation for Cellular Instance Segmentation

Automated cellular instance segmentation is a process utilized for accelerating biological research for the past two decades, and recent advancements have produced higher quality results with less effort from the biologist. Most current endeavors focus on completely cutting the researcher out of the picture by generating highly generalized models. However, these models invariably fail when faced with novel data, distributed differently than the ones used for training. Rather than approaching the problem with methods that presume the availability of large amounts of target data and computing power for retraining, in this work we address the even greater challenge of designing an approach that requires minimal amounts of new annotated data as well as training time. We do so by designing specialized contrastive losses that leverage the few annotated samples very efficiently. A large set of results show that 3 to 5 annotations lead to models with accuracy that: 1) significantly mitigate the covariate shift effects; 2) matches or surpasses other adaptation methods; 3) even approaches methods that have been fully retrained on the target distribution. The adaptation training is only a few minutes, paving a path towards a balance between model performance, computing requirements and expert-level annotation needs.