Reweighting Strategy based on Synthetic Data Identification for Sentence Similarity

Semantically meaningful sentence embeddings are important for numerous tasks in natural language processing. To obtain such embeddings, recent studies explored the idea of utilizing synthetically generated data from pretrained language models (PLMs) as a training corpus. However, PLMs often generate sentences much different from the ones written by human. We hypothesize that treating all these synthetic examples equally for training deep neural networks can have an adverse effect on learning semantically meaningful embeddings. To analyze this, we first train a classifier that identifies machine-written sentences, and observe that the linguistic features of the sentences identified as written by a machine are significantly different from those of human-written sentences. Based on this, we propose a novel approach that first trains the classifier to measure the importance of each sentence. The distilled information from the classifier is then used to train a reliable sentence embedding model. Through extensive evaluation on four real-world datasets, we demonstrate that our model trained on synthetic data generalizes well and outperforms the existing baselines. Our implementation is publicly available at https://github.com/ddehun/coling2022_reweighting_sts.

Automatic Detection of Noisy Electrocardiogram Signals without Explicit Noise Labels

Electrocardiogram (ECG) signals are beneficial in diagnosing cardiovascular diseases, which are one of the leading causes of death. However, they are often contaminated by noise artifacts and affect the automatic and manual diagnosis process. Automatic deep learning-based examination of ECG signals can lead to inaccurate diagnosis, and manual analysis involves rejection of noisy ECG samples by clinicians, which might cost extra time. To address this limitation, we present a two-stage deep learning-based framework to automatically detect the noisy ECG samples. Through extensive experiments and analysis on two different datasets, we observe that the deep learning-based framework can detect slightly and highly noisy ECG samples effectively. We also study the transfer of the model learned on one dataset to another dataset and observe that the framework effectively detects noisy ECG samples.

Task Agnostic and Post-hoc Unseen Distribution Detection

Despite the recent advances in out-of-distribution(OOD) detection, anomaly detection, and uncertainty estimation tasks, there do not exist a task-agnostic and post-hoc approach. To address this limitation, we design a novel clustering-based ensembling method, called Task Agnostic and Post-hoc Unseen Distribution Detection (TAPUDD) that utilizes the features extracted from the model trained on a specific task. Explicitly, it comprises of TAP-Mahalanobis, which clusters the training datasets' features and determines the minimum Mahalanobis distance of the test sample from all clusters. Further, we propose the Ensembling module that aggregates the computation of iterative TAP-Mahalanobis for a different number of clusters to provide reliable and efficient cluster computation. Through extensive experiments on synthetic and real-world datasets, we observe that our approach can detect unseen samples effectively across diverse tasks and performs better or on-par with the existing baselines. To this end, we eliminate the necessity of determining the optimal value of the number of clusters and demonstrate that our method is more viable for large-scale classification tasks.

Towards the Practical Utility of Federated Learning in the Medical Domain

Federated learning (FL) is an active area of research. One of the most suitable areas for adopting FL is the medical domain, where patient privacy must be respected. Previous research, however, does not fully consider who will most likely use FL in the medical domain. It is not the hospitals who are eager to adopt FL, but the service providers such as IT companies who want to develop machine learning models with real patient records. Moreover, service providers would prefer to focus on maximizing the performance of the models at the lowest cost possible. In this work, we propose empirical benchmarks of FL methods considering both performance and monetary cost with three real-world datasets: electronic health records, skin cancer images, and electrocardiogram datasets. We also propose Federated learning with Proximal regularization eXcept local Normalization (FedPxN), which, using a simple combination of FedProx and FedBN, outperforms all other FL algorithms while consuming only slightly more power than the most power efficient method.

BiasEnsemble: Revisiting the Importance of Amplifying Bias for Debiasing

In image classification, "debiasing" aims to train a classifier to be less susceptible to dataset bias, the strong correlation between peripheral attributes of data samples and a target class. For example, even if the frog class in the dataset mainly consists of frog images with a swamp background (i.e., bias-aligned samples), a debiased classifier should be able to correctly classify a frog at a beach (i.e., bias-conflicting samples). Recent debiasing approaches commonly use two components for debiasing, a biased model $f_B$ and a debiased model $f_D$. $f_B$ is trained to focus on bias-aligned samples while $f_D$ is mainly trained with bias-conflicting samples by concentrating on samples which $f_B$ fails to learn, leading $f_D$ to be less susceptible to the dataset bias. While the state-of-the-art debiasing techniques have aimed to better train $f_D$, we focus on training $f_B$, an overlooked component until now. Our empirical analysis reveals that removing the bias-conflicting samples from the training set for $f_B$ is important for improving the debiasing performance of $f_D$. This is due to the fact that the bias-conflicting samples work as noisy samples for amplifying the bias for $f_B$. To this end, we propose a novel biased sample selection method BiasEnsemble which removes the bias-conflicting samples via leveraging additional biased models to construct a bias-amplified dataset for training $f_B$. Our simple yet effective approach can be directly applied to existing reweighting-based debiasing approaches, obtaining consistent performance boost and achieving the state-of-the-art performance on both synthetic and real-world datasets.

Unconditional Image-Text Pair Generation with Multimodal Cross Quantizer

Though deep generative models have gained a lot of attention, most of the existing works are designed for the unimodal generation task. In this paper, we explore a new method for unconditional image-text pair generation. We propose MXQ-VAE, a vector quantization method for multimodal image-text representation. MXQ-VAE accepts a paired image and text as input, and learns a joint quantized representation space, so that the image-text pair can be converted to a sequence of unified indices. Then we can use autoregressive generative models to model the joint image-text representation, and even perform unconditional image-text pair generation. Extensive experimental results demonstrate that our approach effectively generates semantically consistent image-text pair and also enhances meaningful alignment between image and text.

Lead-agnostic Self-supervised Learning for Local and Global Representations of Electrocardiogram

In recent years, self-supervised learning methods have shown significant improvement for pre-training with unlabeled data and have proven helpful for electrocardiogram signals. However, most previous pre-training methods for electrocardiogram focused on capturing only global contextual representations. This inhibits the models from learning fruitful representation of electrocardiogram, which results in poor performance on downstream tasks. Additionally, they cannot fine-tune the model with an arbitrary set of electrocardiogram leads unless the models were pre-trained on the same set of leads. In this work, we propose an ECG pre-training method that learns both local and global contextual representations for better generalizability and performance on downstream tasks. In addition, we propose random lead masking as an ECG-specific augmentation method to make our proposed model robust to an arbitrary set of leads. Experimental results on two downstream tasks, cardiac arrhythmia classification and patient identification, show that our proposed approach outperforms other state-of-the-art methods.

Graph-Text Multi-Modal Pre-training for Medical Representation Learning

As the volume of Electronic Health Records (EHR) sharply grows, there has been emerging interest in learning the representation of EHR for healthcare applications. Representation learning of EHR requires appropriate modeling of the two dominant modalities in EHR: structured data and unstructured text. In this paper, we present MedGTX, a pre-trained model for multi-modal representation learning of the structured and textual EHR data. MedGTX uses a novel graph encoder to exploit the graphical nature of structured EHR data, and a text encoder to handle unstructured text, and a cross-modal encoder to learn a joint representation space. We pre-train our model through four proxy tasks on MIMIC-III, an open-source EHR data, and evaluate our model on two clinical benchmarks and three novel downstream tasks which tackle real-world problems in EHR data. The results consistently show the effectiveness of pre-training the model for joint representation of both structured and unstructured information from EHR. Given the promising performance of MedGTX, we believe this work opens a new door to jointly understanding the two fundamental modalities of EHR data.

Uncertainty-Aware Text-to-Program for Question Answering on Structured Electronic Health Records

Question Answering on Electronic Health Records (EHR-QA) has a significant impact on the healthcare domain, and it is being actively studied. Previous research on structured EHR-QA focuses on converting natural language queries into query language such as SQL or SPARQL (NLQ2Query), so the problem scope is limited to pre-defined data types by the specific query language. In order to expand the EHR-QA task beyond this limitation to handle multi-modal medical data and solve complex inference in the future, more primitive systemic language is needed. In this paper, we design the program-based model (NLQ2Program) for EHR-QA as the first step towards the future direction. We tackle MIMICSPARQL*, the graph-based EHR-QA dataset, via a program-based approach in a semi-supervised manner in order to overcome the absence of gold programs. Without the gold program, our proposed model shows comparable performance to the previous state-of-the-art model, which is an NLQ2Query model (0.9\% gain). In addition, for a reliable EHR-QA model, we apply the uncertainty decomposition method to measure the ambiguity in the input question. We empirically confirmed data uncertainty is most indicative of the ambiguity in the input question.

Real-Time Seizure Detection using EEG: A Comprehensive Comparison of Recent Approaches under a Realistic Setting

Electroencephalogram (EEG) is an important diagnostic test that physicians use to record brain activity and detect seizures by monitoring the signals. There have been several attempts to detect seizures and abnormalities in EEG signals with modern deep learning models to reduce the clinical burden. However, they cannot be fairly compared against each other as they were tested in distinct experimental settings. Also, some of them are not trained in real-time seizure detection tasks, making it hard for on-device applications. Therefore in this work, for the first time, we extensively compare multiple state-of-the-art models and signal feature extractors in a real-time seizure detection framework suitable for real-world application, using various evaluation metrics including a new one we propose to evaluate more practical aspects of seizure detection models. Our code is available at https://github.com/AITRICS/EEG_real_time_seizure_detection.