ClusT3: Information Invariant Test-Time Training

Deep Learning models have shown remarkable performance in a broad range of vision tasks. However, they are often vulnerable against domain shifts at test-time. Test-time training (TTT) methods have been developed in an attempt to mitigate these vulnerabilities, where a secondary task is solved at training time simultaneously with the main task, to be later used as an self-supervised proxy task at test-time. In this work, we propose a novel unsupervised TTT technique based on the maximization of Mutual Information between multi-scale feature maps and a discrete latent representation, which can be integrated to the standard training as an auxiliary clustering task. Experimental results demonstrate competitive classification performance on different popular test-time adaptation benchmarks.

MoP-CLIP: A Mixture of Prompt-Tuned CLIP Models for Domain Incremental Learning

Despite the recent progress in incremental learning, addressing catastrophic forgetting under distributional drift is still an open and important problem. Indeed, while state-of-the-art domain incremental learning (DIL) methods perform satisfactorily within known domains, their performance largely degrades in the presence of novel domains. This limitation hampers their generalizability, and restricts their scalability to more realistic settings where train and test data are drawn from different distributions. To address these limitations, we present a novel DIL approach based on a mixture of prompt-tuned CLIP models (MoP-CLIP), which generalizes the paradigm of S-Prompting to handle both in-distribution and out-of-distribution data at inference. In particular, at the training stage we model the features distribution of every class in each domain, learning individual text and visual prompts to adapt to a given domain. At inference, the learned distributions allow us to identify whether a given test sample belongs to a known domain, selecting the correct prompt for the classification task, or from an unseen domain, leveraging a mixture of the prompt-tuned CLIP models. Our empirical evaluation reveals the poor performance of existing DIL methods under domain shift, and suggests that the proposed MoP-CLIP performs competitively in the standard DIL settings while outperforming state-of-the-art methods in OOD scenarios. These results demonstrate the superiority of MoP-CLIP, offering a robust and general solution to the problem of domain incremental learning.

Mixup-Privacy: A simple yet effective approach for privacy-preserving segmentation

Privacy protection in medical data is a legitimate obstacle for centralized machine learning applications. Here, we propose a client-server image segmentation system which allows for the analysis of multi-centric medical images while preserving patient privacy. In this approach, the client protects the to-be-segmented patient image by mixing it to a reference image. As shown in our work, it is challenging to separate the image mixture to exact original content, thus making the data unworkable and unrecognizable for an unauthorized person. This proxy image is sent to a server for processing. The server then returns the mixture of segmentation maps, which the client can revert to a correct target segmentation. Our system has two components: 1) a segmentation network on the server side which processes the image mixture, and 2) a segmentation unmixing network which recovers the correct segmentation map from the segmentation mixture. Furthermore, the whole system is trained end-to-end. The proposed method is validated on the task of MRI brain segmentation using images from two different datasets. Results show that the segmentation accuracy of our method is comparable to a system trained on raw images, and outperforms other privacy-preserving methods with little computational overhead.

What Matters in Reinforcement Learning for Tractography

Recently, deep reinforcement learning (RL) has been proposed to learn the tractography procedure and train agents to reconstruct the structure of the white matter without manually curated reference streamlines. While the performances reported were competitive, the proposed framework is complex, and little is still known about the role and impact of its multiple parts. In this work, we thoroughly explore the different components of the proposed framework, such as the choice of the RL algorithm, seeding strategy, the input signal and reward function, and shed light on their impact. Approximately 7,400 models were trained for this work, totalling nearly 41,000 hours of GPU time. Our goal is to guide researchers eager to explore the possibilities of deep RL for tractography by exposing what works and what does not work with the category of approach. As such, we ultimately propose a series of recommendations concerning the choice of RL algorithm, the input to the agents, the reward function and more to help future work using reinforcement learning for tractography. We also release the open source codebase, trained models, and datasets for users and researchers wanting to explore reinforcement learning for tractography.

TFS-ViT: Token-Level Feature Stylization for Domain Generalization

Standard deep learning models such as convolutional neural networks (CNNs) lack the ability of generalizing to domains which have not been seen during training. This problem is mainly due to the common but often wrong assumption of such models that the source and target data come from the same i.i.d. distribution. Recently, Vision Transformers (ViTs) have shown outstanding performance for a broad range of computer vision tasks. However, very few studies have investigated their ability to generalize to new domains. This paper presents a first Token-level Feature Stylization (TFS-ViT) approach for domain generalization, which improves the performance of ViTs to unseen data by synthesizing new domains. Our approach transforms token features by mixing the normalization statistics of images from different domains. We further improve this approach with a novel strategy for attention-aware stylization, which uses the attention maps of class (CLS) tokens to compute and mix normalization statistics of tokens corresponding to different image regions. The proposed method is flexible to the choice of backbone model and can be easily applied to any ViT-based architecture with a negligible increase in computational complexity. Comprehensive experiments show that our approach is able to achieve state-of-the-art performance on five challenging benchmarks for domain generalization, and demonstrate its ability to deal with different types of domain shifts. The implementation is available at: https://github.com/Mehrdad-Noori/TFS-ViT_Token-level_Feature_Stylization.

Harmonizing Flows: Unsupervised MR harmonization based on normalizing flows

In this paper, we propose an unsupervised framework based on normalizing flows that harmonizes MR images to mimic the distribution of the source domain. The proposed framework consists of three steps. First, a shallow harmonizer network is trained to recover images of the source domain from their augmented versions. A normalizing flow network is then trained to learn the distribution of the source domain. Finally, at test time, a harmonizer network is modified so that the output images match the source domain's distribution learned by the normalizing flow model. Our unsupervised, source-free and task-independent approach is evaluated on cross-domain brain MRI segmentation using data from four different sites. Results demonstrate its superior performance compared to existing methods.

Active learning for medical image segmentation with stochastic batches

The performance of learning-based algorithms improves with the amount of labelled data used for training. Yet, manually annotating data can be tedious and expensive, especially in medical image segmentation. To reduce manual labelling, active learning (AL) targets the most informative samples from the unlabelled set to annotate and add to the labelled training set. On one hand, most active learning works have focused on the classification or limited segmentation of natural images, despite active learning being highly desirable in the difficult task of medical image segmentation. On the other hand, uncertainty-based AL approaches notoriously offer sub-optimal batch-query strategies, while diversity-based methods tend to be computationally expensive. Over and above methodological hurdles, random sampling has proven an extremely difficult baseline to outperform when varying learning and sampling conditions. This work aims to take advantage of the diversity and speed offered by random sampling to improve the selection of uncertainty-based AL methods for segmenting medical images. More specifically, we propose to compute uncertainty at the level of batches instead of samples through an original use of stochastic batches during sampling in AL. Exhaustive experiments on medical image segmentation, with an illustration on MRI prostate imaging, show that the benefits of stochastic batches during sample selection are robust to a variety of changes in the training and sampling procedures.

TAAL: Test-time Augmentation for Active Learning in Medical Image Segmentation

Deep learning methods typically depend on the availability of labeled data, which is expensive and time-consuming to obtain. Active learning addresses such effort by prioritizing which samples are best to annotate in order to maximize the performance of the task model. While frameworks for active learning have been widely explored in the context of classification of natural images, they have been only sparsely used in medical image segmentation. The challenge resides in obtaining an uncertainty measure that reveals the best candidate data for annotation. This paper proposes Test-time Augmentation for Active Learning (TAAL), a novel semi-supervised active learning approach for segmentation that exploits the uncertainty information offered by data transformations. Our method applies cross-augmentation consistency during training and inference to both improve model learning in a semi-supervised fashion and identify the most relevant unlabeled samples to annotate next. In addition, our consistency loss uses a modified version of the JSD to further improve model performance. By relying on data transformations rather than on external modules or simple heuristics typically used in uncertainty-based strategies, TAAL emerges as a simple, yet powerful task-agnostic semi-supervised active learning approach applicable to the medical domain. Our results on a publicly-available dataset of cardiac images show that TAAL outperforms existing baseline methods in both fully-supervised and semi-supervised settings. Our implementation is publicly available on https://github.com/melinphd/TAAL.

Camera Alignment and Weighted Contrastive Learning for Domain Adaptation in Video Person ReID

Systems for person re-identification (ReID) can achieve a high accuracy when trained on large fully-labeled image datasets. However, the domain shift typically associated with diverse operational capture conditions (e.g., camera viewpoints and lighting) may translate to a significant decline in performance. This paper focuses on unsupervised domain adaptation (UDA) for video-based ReID - a relevant scenario that is less explored in the literature. In this scenario, the ReID model must adapt to a complex target domain defined by a network of diverse video cameras based on tracklet information. State-of-art methods cluster unlabeled target data, yet domain shifts across target cameras (sub-domains) can lead to poor initialization of clustering methods that propagates noise across epochs, thus preventing the ReID model to accurately associate samples of same identity. In this paper, an UDA method is introduced for video person ReID that leverages knowledge on video tracklets, and on the distribution of frames captured over target cameras to improve the performance of CNN backbones trained using pseudo-labels. Our method relies on an adversarial approach, where a camera-discriminator network is introduced to extract discriminant camera-independent representations, facilitating the subsequent clustering. In addition, a weighted contrastive loss is proposed to leverage the confidence of clusters, and mitigate the risk of incorrect identity associations. Experimental results obtained on three challenging video-based person ReID datasets - PRID2011, iLIDS-VID, and MARS - indicate that our proposed method can outperform related state-of-the-art methods. Our code is available at: \url{https://github.com/dmekhazni/CAWCL-ReID}

TTTFlow: Unsupervised Test-Time Training with Normalizing Flow

A major problem of deep neural networks for image classification is their vulnerability to domain changes at test-time. Recent methods have proposed to address this problem with test-time training (TTT), where a two-branch model is trained to learn a main classification task and also a self-supervised task used to perform test-time adaptation. However, these techniques require defining a proxy task specific to the target application. To tackle this limitation, we propose TTTFlow: a Y-shaped architecture using an unsupervised head based on Normalizing Flows to learn the normal distribution of latent features and detect domain shifts in test examples. At inference, keeping the unsupervised head fixed, we adapt the model to domain-shifted examples by maximizing the log likelihood of the Normalizing Flow. Our results show that our method can significantly improve the accuracy with respect to previous works.