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Synth-by-Reg (SbR): Contrastive learning for synthesis-based registration of paired images

Jul 30, 2021
Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias

* Simulation and Synthesis in Medical Imaging (SASHIMI) 

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Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas

May 04, 2021
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias

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DeepReg: a deep learning toolkit for medical image registration

Nov 04, 2020
Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu

* Accepted in The Journal of Open Source Software (JOSS) 

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Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge

Apr 01, 2019
Hugo J. Kuijf, J. Matthijs Biesbroek, Jeroen de Bresser, Rutger Heinen, Simon Andermatt, Mariana Bento, Matt Berseth, Mikhail Belyaev, M. Jorge Cardoso, Adrià Casamitjana, D. Louis Collins, Mahsa Dadar, Achilleas Georgiou, Mohsen Ghafoorian, Dakai Jin, April Khademi, Jesse Knight, Hongwei Li, Xavier Lladó, Miguel Luna, Qaiser Mahmood, Richard McKinley, Alireza Mehrtash, Sébastien Ourselin, Bo-yong Park, Hyunjin Park, Sang Hyun Park, Simon Pezold, Elodie Puybareau, Leticia Rittner, Carole H. Sudre, Sergi Valverde, Verónica Vilaplana, Roland Wiest, Yongchao Xu, Ziyue Xu, Guodong Zeng, Jianguo Zhang, Guoyan Zheng, Christopher Chen, Wiesje van der Flier, Frederik Barkhof, Max A. Viergever, Geert Jan Biessels

* Accepted for publication in IEEE Transactions on Medical Imaging 

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Cascaded V-Net using ROI masks for brain tumor segmentation

Dec 30, 2018
Adrià Casamitjana, Marcel Catà, Irina Sánchez, Marc Combalia, Verónica Vilaplana

* Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, Series volume 10670, 2018, Springer International Publishing AG, part of Springer Nature 
* Third International Workshop, BrainLes 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, 2017, Revised Selected Papers 

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3D Convolutional Neural Networks for Brain Tumor Segmentation: A Comparison of Multi-resolution Architectures

May 23, 2017
Adrià Casamitjana, Santi Puch, Asier Aduriz, Verónica Vilaplana

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Voxelwise nonlinear regression toolbox for neuroimage analysis: Application to aging and neurodegenerative disease modeling

Apr 18, 2017
Santi Puch, Asier Aduriz, Adrià Casamitjana, Veronica Vilaplana, Paula Petrone, Grégory Operto, Raffaele Cacciaglia, Stavros Skouras, Carles Falcon, José Luis Molinuevo, Juan Domingo Gispert

* 4 pages + 1 page for acknowledgements and references. NIPS 2016 Workshop on Machine Learning for Health (NIPS ML4HC) 

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