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ImmunoLingo: Linguistics-based formalization of the antibody language


Sep 26, 2022
Mai Ha Vu, Philippe A. Robert, Rahmad Akbar, Bartlomiej Swiatczak, Geir Kjetil Sandve, Dag Trygve Truslew Haug, Victor Greiff

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* 19 pages, 3 figures 

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Advancing protein language models with linguistics: a roadmap for improved interpretability


Jul 03, 2022
Mai Ha Vu, Rahmad Akbar, Philippe A. Robert, Bartlomiej Swiatczak, Victor Greiff, Geir Kjetil Sandve, Dag Trygve Truslew Haug

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* 26 pages, 4 figures 

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Improving generalization of machine learning-identified biomarkers with causal modeling: an investigation into immune receptor diagnostics


Apr 20, 2022
Milena Pavlović, Ghadi S. Al Hajj, Johan Pensar, Mollie Wood, Ludvig M. Sollid, Victor Greiff, Geir Kjetil Sandve

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AntBO: Towards Real-World Automated Antibody Design with Combinatorial Bayesian Optimisation


Feb 16, 2022
Asif Khan, Alexander I. Cowen-Rivers, Derrick-Goh-Xin Deik, Antoine Grosnit, Kamil Dreczkowski, Philippe A. Robert, Victor Greiff, Rasul Tutunov, Dany Bou-Ammar, Jun Wang, Haitham Bou-Ammar

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Modern Hopfield Networks and Attention for Immune Repertoire Classification


Jul 16, 2020
Michael Widrich, Bernhard Schäfl, Hubert Ramsauer, Milena Pavlović, Lukas Gruber, Markus Holzleitner, Johannes Brandstetter, Geir Kjetil Sandve, Victor Greiff, Sepp Hochreiter, Günter Klambauer

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* 10 pages (+appendix); Source code and datasets: https://github.com/ml-jku/DeepRC 

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Hopfield Networks is All You Need


Jul 16, 2020
Hubert Ramsauer, Bernhard Schäfl, Johannes Lehner, Philipp Seidl, Michael Widrich, Lukas Gruber, Markus Holzleitner, Milena Pavlović, Geir Kjetil Sandve, Victor Greiff, David Kreil, Michael Kopp, Günter Klambauer, Johannes Brandstetter, Sepp Hochreiter

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* 10 pages (+ appendix); 9 figures; Companion paper with "Modern Hopfield Networks and Attention for Immune Repertoire Classification"; GitHub: https://github.com/ml-jku/hopfield-layers 

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