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Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs



Stephen Bonner , Ufuk Kirik , Ola Engkvist , Jian Tang , Ian P Barrett


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A Unified View of Relational Deep Learning for Drug Pair Scoring



Benedek Rozemberczki , Stephen Bonner , Andriy Nikolov , Michael Ughetto , Sebastian Nilsson , Eliseo Papa


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A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Synergy, and Drug-Drug Interaction Prediction



Benedek Rozemberczki , Stephen Bonner , Andriy Nikolov , Michael Ughetto , Sebastian Nilsson , Eliseo Papa


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Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery



Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton


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Predicting Potential Drug Targets Using Tensor Factorisation and Knowledge Graph Embeddings



Cheng Ye , Rowan Swiers , Stephen Bonner , Ian Barrett

* 8 pages, 5 figures 

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A Review of Biomedical Datasets Relating to Drug Discovery: A Knowledge Graph Perspective



Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Andreas Bender , William Hamilton


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Not Half Bad: Exploring Half-Precision in Graph Convolutional Neural Networks



John Brennan , Stephen Bonner , Amir Atapour-Abarghouei , Philip T Jackson , Boguslaw Obara , Andrew Stephen McGough


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