Diffusion Models for Graphs Benefit From Discrete State Spaces

Denoising diffusion probabilistic models and score matching models have proven to be very powerful for generative tasks. While these approaches have also been applied to the generation of discrete graphs, they have, so far, relied on continuous Gaussian perturbations. Instead, in this work, we suggest using discrete noise for the forward Markov process. This ensures that in every intermediate step the graph remains discrete. Compared to the previous approach, our experimental results on four datasets and multiple architectures show that using a discrete noising process results in higher quality generated samples indicated with an average MMDs reduced by a factor of 1.5. Furthermore, the number of denoising steps is reduced from 1000 to 32 steps leading to a 30 times faster sampling procedure.

A Neural Model for Regular Grammar Induction

Grammatical inference is a classical problem in computational learning theory and a topic of wider influence in natural language processing. We treat grammars as a model of computation and propose a novel neural approach to induction of regular grammars from positive and negative examples. Our model is fully explainable, its intermediate results are directly interpretable as partial parses, and it can be used to learn arbitrary regular grammars when provided with sufficient data. We find that our method consistently attains high recall and precision scores across a range of tests of varying complexity.

Periodic Extrapolative Generalisation in Neural Networks

The learning of the simplest possible computational pattern -- periodicity -- is an open problem in the research of strong generalisation in neural networks. We formalise the problem of extrapolative generalisation for periodic signals and systematically investigate the generalisation abilities of classical, population-based, and recently proposed periodic architectures on a set of benchmarking tasks. We find that periodic and "snake" activation functions consistently fail at periodic extrapolation, regardless of the trainability of their periodicity parameters. Further, our results show that traditional sequential models still outperform the novel architectures designed specifically for extrapolation, and that these are in turn trumped by population-based training. We make our benchmarking and evaluation toolkit, PerKit, available and easily accessible to facilitate future work in the area.

FACT: Learning Governing Abstractions Behind Integer Sequences

Integer sequences are of central importance to the modeling of concepts admitting complete finitary descriptions. We introduce a novel view on the learning of such concepts and lay down a set of benchmarking tasks aimed at conceptual understanding by machine learning models. These tasks indirectly assess model ability to abstract, and challenge them to reason both interpolatively and extrapolatively from the knowledge gained by observing representative examples. To further aid research in knowledge representation and reasoning, we present FACT, the Finitary Abstraction Comprehension Toolkit. The toolkit surrounds a large dataset of integer sequences comprising both organic and synthetic entries, a library for data pre-processing and generation, a set of model performance evaluation tools, and a collection of baseline model implementations, enabling the making of the future advancements with ease.

Deterministic Graph-Walking Program Mining

Owing to their versatility, graph structures admit representations of intricate relationships between the separate entities comprising the data. We formalise the notion of connection between two vertex sets in terms of edge and vertex features by introducing graph-walking programs. We give two algorithms for mining of deterministic graph-walking programs that yield programs in the order of increasing length. These programs characterise linear long-distance relationships between the given two vertex sets in the context of the whole graph.

Agent-based Graph Neural Networks

We present a novel graph neural network we call AgentNet, which is designed specifically for graph-level tasks. AgentNet is inspired by sublinear algorithms, featuring a computational complexity that is independent of the graph size. The architecture of AgentNet differs fundamentally from the architectures of known graph neural networks. In AgentNet, some trained \textit{neural agents} intelligently walk the graph, and then collectively decide on the output. We provide an extensive theoretical analysis of AgentNet: We show that the agents can learn to systematically explore their neighborhood and that AgentNet can distinguish some structures that are even indistinguishable by 3-WL. Moreover, AgentNet is able to separate any two graphs which are sufficiently different in terms of subgraphs. We confirm these theoretical results with synthetic experiments on hard-to-distinguish graphs and real-world graph classification tasks. In both cases, we compare favorably not only to standard GNNs but also to computationally more expensive GNN extensions.

A Deep Learning Approach for the Segmentation of Electroencephalography Data in Eye Tracking Applications

The collection of eye gaze information provides a window into many critical aspects of human cognition, health and behaviour. Additionally, many neuroscientific studies complement the behavioural information gained from eye tracking with the high temporal resolution and neurophysiological markers provided by electroencephalography (EEG). One of the essential eye-tracking software processing steps is the segmentation of the continuous data stream into events relevant to eye-tracking applications, such as saccades, fixations, and blinks. Here, we introduce DETRtime, a novel framework for time-series segmentation that creates ocular event detectors that do not require additionally recorded eye-tracking modality and rely solely on EEG data. Our end-to-end deep learning-based framework brings recent advances in Computer Vision to the forefront of the times series segmentation of EEG data. DETRtime achieves state-of-the-art performance in ocular event detection across diverse eye-tracking experiment paradigms. In addition to that, we provide evidence that our model generalizes well in the task of EEG sleep stage segmentation.

Graph Neural Networks with Precomputed Node Features

Most Graph Neural Networks (GNNs) cannot distinguish some graphs or indeed some pairs of nodes within a graph. This makes it impossible to solve certain classification tasks. However, adding additional node features to these models can resolve this problem. We introduce several such augmentations, including (i) positional node embeddings, (ii) canonical node IDs, and (iii) random features. These extensions are motivated by theoretical results and corroborated by extensive testing on synthetic subgraph detection tasks. We find that positional embeddings significantly outperform other extensions in these tasks. Moreover, positional embeddings have better sample efficiency, perform well on different graph distributions and even outperform learning with ground truth node positions. Finally, we show that the different augmentations perform competitively on established GNN benchmarks, and advise on when to use them.

DT+GNN: A Fully Explainable Graph Neural Network using Decision Trees

We propose the fully explainable Decision Tree Graph Neural Network (DT+GNN) architecture. In contrast to existing black-box GNNs and post-hoc explanation methods, the reasoning of DT+GNN can be inspected at every step. To achieve this, we first construct a differentiable GNN layer, which uses a categorical state space for nodes and messages. This allows us to convert the trained MLPs in the GNN into decision trees. These trees are pruned using our newly proposed method to ensure they are small and easy to interpret. We can also use the decision trees to compute traditional explanations. We demonstrate on both real-world datasets and synthetic GNN explainability benchmarks that this architecture works as well as traditional GNNs. Furthermore, we leverage the explainability of DT+GNNs to find interesting insights into many of these datasets, with some surprising results. We also provide an interactive web tool to inspect DT+GNN's decision making.