Abstract:Whole-slide pathology reasoning requires models to integrate gigapixel-scale visual evidence across complete case-linked slides, yet current question-answering benchmarks primarily measure final answer accuracy--a metric vulnerable to linguistic priors and benchmark regularities, and insufficient to establish that predictions are grounded in the supplied tissue. We introduce PathoArgus-Bench, a benchmark and evaluation protocol that explicitly tests the full evidence chain: availability, accessibility, use, and responsiveness. PathoArgus-Bench comprises 22,078 four-choice questions from 4,913 patients across 15 TCGA projects, covering six pathology capabilities across three levels of evidence demand, and operates under a fixed reader budget that retains only a small fraction of the gigapixel context. To further isolate evidence-grounded reasoning, we contribute ESG (Evidence State Quartets), a controlled set of 483 quartets where the question text is fixed while the target WSI set is moved, replaced, or removed, requiring consistent predictions across all states. Evaluating 20 general-purpose, medical, and pathology-specific systems reveals a stark gap: while GPT-5.6 achieves 57.09% overall accuracy and 57.04% on ESG, it correctly completes only 19 of 483 quartets (3.93% QExact), exposing that row-level accuracy does not translate into reliable evidence grounding. We also introduce PathoArgus, a fixed-budget reader that allocates context via question relevance and spatial coverage, attaining 50.39% overall accuracy yet only 1.86% QExact--demonstrating that improved context access alone does not ensure consistent evidence-based prediction. Our benchmark and diagnostics establish that acquiring useful whole-slide context is necessary but far from sufficient, and call for a shift from answer-centric to evidence-grounded evaluation in computational pathology.
Abstract:Cancer survival prediction supports treatment planning, risk stratification, and follow-up management. Existing methods use structured clinical variables, whole-slide images, genomic profiles, or multimodal inputs, while patient reports remain underexplored. We study report-centric survival prediction using reports that organize pathological, clinical, and molecular evidence. Large language models (LLMs) can reason over such reports, but case-wise time regression introduces two mismatches. First, a formulation mismatch arises because survival evaluation depends on ordering comparable patients, whereas independent time predictions do not enforce ranking consistency. Second, a supervision mismatch arises because a censored patient's observed time indicates survival beyond that point and cannot serve as an exact regression target, although it still implies orderings relative to patients who died earlier. To address these mismatches, we propose CACSurv, a Concordance-Aligned Comparative framework for report-centric survival prediction. CACSurv reformulates survival modeling as mini-cohort comparative reasoning, where an LLM predicts relative prognostic orderings. We introduce concordance-aligned rewards derived from comparable relations under right censoring, enabling censored outcomes to provide ranking supervision without exact event-time targets. At inference, Monte Carlo Reference Aggregation compares each patient with sampled references and aggregates positions into a cohort-level ranking. We establish TCGA-SurvReport, a benchmark covering six TCGA cancer cohorts. CACSurv achieves the highest C-index on all six cohorts and an average C-index of 0.722, outperforming the strongest published survival model by 6.5 percentage points and the strongest LLM time-regression baseline by 4.2 percentage points. Our code, models, and dataset will be available at https://github.com/xmed-lab/CACSurv.
Abstract:Whole slide image analysis is commonly formulated as multiple instance learning (MIL), where instance features are contextually updated and aggregated into a slide representation, a process we term slide encoding dynamics. Recently, selective state-space models (SSM) have emerged as promising MIL architectures due to their long-sequence modeling capability and linear complexity. However, existing SSM-based MIL methods rely solely on visual features during MIL. Meanwhile, in large-scale WSIs, where sparse diagnostically decisive regions are surrounded by abundant irrelevant information, such purely vision-driven selective dynamics can misallocate state updates and readouts, causing the evolving SSM state to accumulate task-irrelevant evidence and dilute critical diagnostic cues over long scan trajectories. In this work, we propose the Knowledge-Aware Hidden-State Modulation architecture (KHiM-Mamba), which innovatively regulates Mamba's core selective state-space mechanism with explicit knowledge priors, steering slide encoding dynamics toward diagnostically meaningful evidence accumulation. Specifically, we redesign the original SSM layer to perform knowledge modulation operations during the evolution of hidden states, thereby guiding what visual evidence is accumulated and retrieved from the hidden state at each encoding step. Furthermore, we additionally introduce a local-adaptive vocabulary retrieval module that uses large language models to assign each patch fine-grained, tissue-specific semantic descriptions, enabling precise modulation across diverse tasks. Experiments on 11 public benchmarks across 4 tasks show that KHiM-Mamba consistently achieves state-of-the-art performance.
Abstract:Closed-track testing plays a fundamental role in the verification and validation of automated driving systems (ADS), particularly for safety-critical scenarios, by enabling reproducible evaluation under controlled conditions. However, most existing approaches still rely on standardized protocols or predefined trajectories, leading to overly scripted interactions and limited ability to reproduce the natural complexity of public-road traffic. To address this limitation, we propose Video2Track, a framework that transfers real-world interactive driving scenarios from videos into steerable adversarial closed-track testing. The framework consists of two tightly coupled modules. The first is a scenario semantic mapping module, which extracts structured semantics from driving videos using a vision-language model and grounds them onto a closed-track topology library via retrieval-augmented generation, thereby identifying compatible map segments and interaction anchors. The second is a dynamic interactive testing module, which conditions on the grounded topology and anchors to generate diverse multi-agent trajectories through a conditional diffusion model, while regulating interaction intensity via a Stackelberg game with a parameterized adversarial objective. Closed-track experiments demonstrate that the proposed framework can faithfully reproduce representative real-world interaction scenarios and generate executable scenario variants with controllable risk levels and interaction styles, providing a scalable approach for realistic and steerable ADS validation.
Abstract:Recent advances in histopathology vision-language foundation models (VLFMs) have shown promise in addressing data scarcity for whole slide image (WSI) classification via zero-shot adaptation. However, these methods remain outperformed by conventional multiple instance learning (MIL) approaches trained on large datasets, motivating recent efforts to enhance VLFM-based WSI classification through fewshot learning paradigms. While existing few-shot methods improve diagnostic accuracy with limited annotations, their reliance on conventional classifier designs introduces critical vulnerabilities to data scarcity. To address this problem, we propose a Meta-Optimized Classifier (MOC) comprising two core components: (1) a meta-learner that automatically optimizes a classifier configuration from a mixture of candidate classifiers and (2) a classifier bank housing diverse candidate classifiers to enable a holistic pathological interpretation. Extensive experiments demonstrate that MOC outperforms prior arts in multiple few-shot benchmarks. Notably, on the TCGA-NSCLC benchmark, MOC improves AUC by 10.4% over the state-of-the-art few-shot VLFM-based methods, with gains up to 26.25% under 1-shot conditions, offering a critical advancement for clinical deployments where diagnostic training data is severely limited. Code is available at https://github.com/xmed-lab/MOC.
Abstract:The emergence of unified multimodal understanding and generation models is rapidly attracting attention because of their ability to enhance instruction-following capabilities while minimizing model redundancy. However, there is a lack of a unified evaluation framework for these models, which would enable an elegant, simplified, and overall evaluation. Current models conduct evaluations on multiple task-specific benchmarks, but there are significant limitations, such as the lack of overall results, errors from extra evaluation models, reliance on extensive labeled images, benchmarks that lack diversity, and metrics with limited capacity for instruction-following evaluation. To tackle these challenges, we introduce UniEval, the first evaluation framework designed for unified multimodal models without extra models, images, or annotations. This facilitates a simplified and unified evaluation process. The UniEval framework contains a holistic benchmark, UniBench (supports both unified and visual generation models), along with the corresponding UniScore metric. UniBench includes 81 fine-grained tags contributing to high diversity. Experimental results indicate that UniBench is more challenging than existing benchmarks, and UniScore aligns closely with human evaluations, surpassing current metrics. Moreover, we extensively evaluated SoTA unified and visual generation models, uncovering new insights into Univeral's unique values.
Abstract:Generalist Medical AI (GMAI) systems have demonstrated expert-level performance in biomedical perception tasks, yet their clinical utility remains limited by inadequate multi-modal explainability and suboptimal prognostic capabilities. Here, we present XMedGPT, a clinician-centric, multi-modal AI assistant that integrates textual and visual interpretability to support transparent and trustworthy medical decision-making. XMedGPT not only produces accurate diagnostic and descriptive outputs, but also grounds referenced anatomical sites within medical images, bridging critical gaps in interpretability and enhancing clinician usability. To support real-world deployment, we introduce a reliability indexing mechanism that quantifies uncertainty through consistency-based assessment via interactive question-answering. We validate XMedGPT across four pillars: multi-modal interpretability, uncertainty quantification, and prognostic modeling, and rigorous benchmarking. The model achieves an IoU of 0.703 across 141 anatomical regions, and a Kendall's tau-b of 0.479, demonstrating strong alignment between visual rationales and clinical outcomes. For uncertainty estimation, it attains an AUC of 0.862 on visual question answering and 0.764 on radiology report generation. In survival and recurrence prediction for lung and glioma cancers, it surpasses prior leading models by 26.9%, and outperforms GPT-4o by 25.0%. Rigorous benchmarking across 347 datasets covers 40 imaging modalities and external validation spans 4 anatomical systems confirming exceptional generalizability, with performance gains surpassing existing GMAI by 20.7% for in-domain evaluation and 16.7% on 11,530 in-house data evaluation. Together, XMedGPT represents a significant leap forward in clinician-centric AI integration, offering trustworthy and scalable support for diverse healthcare applications.
Abstract:Medical AI assistants support doctors in disease diagnosis, medical image analysis, and report generation. However, they still face significant challenges in clinical use, including limited accuracy with multimodal content and insufficient validation in real-world settings. We propose RCMed, a full-stack AI assistant that improves multimodal alignment in both input and output, enabling precise anatomical delineation, accurate localization, and reliable diagnosis through hierarchical vision-language grounding. A self-reinforcing correlation mechanism allows visual features to inform language context, while language semantics guide pixel-wise attention, forming a closed loop that refines both modalities. This correlation is enhanced by a color region description strategy, translating anatomical structures into semantically rich text to learn shape-location-text relationships across scales. Trained on 20 million image-mask-description triplets, RCMed achieves state-of-the-art precision in contextualizing irregular lesions and subtle anatomical boundaries, excelling in 165 clinical tasks across 9 modalities. It achieved a 23.5% relative improvement in cell segmentation from microscopy images over prior methods. RCMed's strong vision-language alignment enables exceptional generalization, with state-of-the-art performance in external validation across 20 clinically significant cancer types, including novel tasks. This work demonstrates how integrated multimodal models capture fine-grained patterns, enabling human-level interpretation in complex scenarios and advancing human-centric AI healthcare.




Abstract:Decoding visual stimuli from neural activity is essential for understanding the human brain. While fMRI methods have successfully reconstructed static images, fMRI-to-video reconstruction faces challenges due to the need for capturing spatiotemporal dynamics like motion and scene transitions. Recent approaches have improved semantic and perceptual alignment but struggle to integrate coarse fMRI data with detailed visual features. Inspired by the hierarchical organization of the visual system, we propose NEURONS, a novel framework that decouples learning into four correlated sub-tasks: key object segmentation, concept recognition, scene description, and blurry video reconstruction. This approach simulates the visual cortex's functional specialization, allowing the model to capture diverse video content. In the inference stage, NEURONS generates robust conditioning signals for a pre-trained text-to-video diffusion model to reconstruct the videos. Extensive experiments demonstrate that NEURONS outperforms state-of-the-art baselines, achieving solid improvements in video consistency (26.6%) and semantic-level accuracy (19.1%). Notably, NEURONS shows a strong functional correlation with the visual cortex, highlighting its potential for brain-computer interfaces and clinical applications. Code and model weights will be available at: https://github.com/xmed-lab/NEURONS.
Abstract:Semi-supervised medical image segmentation (SSMIS) has emerged as a promising solution to tackle the challenges of time-consuming manual labeling in the medical field. However, in practical scenarios, there are often domain variations within the datasets, leading to derivative scenarios like semi-supervised medical domain generalization (Semi-MDG) and unsupervised medical domain adaptation (UMDA). In this paper, we aim to develop a generic framework that masters all three tasks. We notice a critical shared challenge across three scenarios: the explicit semantic knowledge for segmentation performance and rich domain knowledge for generalizability exclusively exist in the labeled set and unlabeled set respectively. Such discrepancy hinders existing methods from effectively comprehending both types of knowledge under semi-supervised settings. To tackle this challenge, we develop a Semantic & Domain Knowledge Messenger (S&D Messenger) which facilitates direct knowledge delivery between the labeled and unlabeled set, and thus allowing the model to comprehend both of them in each individual learning flow. Equipped with our S&D Messenger, a naive pseudo-labeling method can achieve huge improvement on six benchmark datasets for SSMIS (+7.5%), UMDA (+5.6%), and Semi-MDG tasks (+1.14%), compared with state-of-the-art methods designed for specific tasks.