Graph Neural Networks on Discriminative Graphs of Words

In light of the recent success of Graph Neural Networks (GNNs) and their ability to perform inference on complex data structures, many studies apply GNNs to the task of text classification. In most previous methods, a heterogeneous graph, containing both word and document nodes, is constructed using the entire corpus and a GNN is used to classify document nodes. In this work, we explore a new Discriminative Graph of Words Graph Neural Network (DGoW-GNN) approach encapsulating both a novel discriminative graph construction and model to classify text. In our graph construction, containing only word nodes and no document nodes, we split the training corpus into disconnected subgraphs according to their labels and weight edges by the pointwise mutual information of the represented words. Our graph construction, for which we provide theoretical motivation, allows us to reformulate the task of text classification as the task of walk classification. We also propose a new model for the graph-based classification of text, which combines a GNN and a sequence model. We evaluate our approach on seven benchmark datasets and find that it is outperformed by several state-of-the-art baseline models. We analyse reasons for this performance difference and hypothesise under which conditions it is likely to change.

Graph Linearization Methods for Reasoning on Graphs with Large Language Models

Large language models have evolved to process multiple modalities beyond text, such as images and audio, which motivates us to explore how to effectively leverage them for graph machine learning tasks. The key question, therefore, is how to transform graphs into linear sequences of tokens, a process we term graph linearization, so that LLMs can handle graphs naturally. We consider that graphs should be linearized meaningfully to reflect certain properties of natural language text, such as local dependency and global alignment, in order to ease contemporary LLMs, trained on trillions of textual tokens, better understand graphs. To achieve this, we developed several graph linearization methods based on graph centrality, degeneracy, and node relabeling schemes. We then investigated their effect on LLM performance in graph reasoning tasks. Experimental results on synthetic graphs demonstrate the effectiveness of our methods compared to random linearization baselines. Our work introduces novel graph representations suitable for LLMs, contributing to the potential integration of graph machine learning with the trend of multi-modal processing using a unified transformer model.

Bias in the Mirror : Are LLMs opinions robust to their own adversarial attacks ?

Large language models (LLMs) inherit biases from their training data and alignment processes, influencing their responses in subtle ways. While many studies have examined these biases, little work has explored their robustness during interactions. In this paper, we introduce a novel approach where two instances of an LLM engage in self-debate, arguing opposing viewpoints to persuade a neutral version of the model. Through this, we evaluate how firmly biases hold and whether models are susceptible to reinforcing misinformation or shifting to harmful viewpoints. Our experiments span multiple LLMs of varying sizes, origins, and languages, providing deeper insights into bias persistence and flexibility across linguistic and cultural contexts.

Graph Reasoning with Large Language Models via Pseudo-code Prompting

Large language models (LLMs) have recently achieved remarkable success in various reasoning tasks in the field of natural language processing. This success of LLMs has also motivated their use in graph-related tasks. Among others, recent work has explored whether LLMs can solve graph problems such as counting the number of connected components of a graph or computing the shortest path distance between two nodes. Although LLMs possess preliminary graph reasoning abilities, they might still struggle to solve some seemingly simple problems. In this paper, we investigate whether prompting via pseudo-code instructions can improve the performance of LLMs in solving graph problems. Our experiments demonstrate that using pseudo-code instructions generally improves the performance of all considered LLMs. The graphs, pseudo-code prompts, and evaluation code are publicly available.

Atlas-Chat: Adapting Large Language Models for Low-Resource Moroccan Arabic Dialect

We introduce Atlas-Chat, the first-ever collection of large language models specifically developed for dialectal Arabic. Focusing on Moroccan Arabic, also known as Darija, we construct our instruction dataset by consolidating existing Darija language resources, creating novel datasets both manually and synthetically, and translating English instructions with stringent quality control. Atlas-Chat-9B and 2B models, fine-tuned on the dataset, exhibit superior ability in following Darija instructions and performing standard NLP tasks. Notably, our models outperform both state-of-the-art and Arabic-specialized LLMs like LLaMa, Jais, and AceGPT, e.g., achieving a 13% performance boost over a larger 13B model on DarijaMMLU, in our newly introduced evaluation suite for Darija covering both discriminative and generative tasks. Furthermore, we perform an experimental analysis of various fine-tuning strategies and base model choices to determine optimal configurations. All our resources are publicly accessible, and we believe our work offers comprehensive design methodologies of instruction-tuning for low-resource language variants, which are often neglected in favor of data-rich languages by contemporary LLMs.

Signed Graph Autoencoder for Explainable and Polarization-Aware Network Embeddings

Autoencoders based on Graph Neural Networks (GNNs) have garnered significant attention in recent years for their ability to extract informative latent representations, characterizing the structure of complex topologies, such as graphs. Despite the prevalence of Graph Autoencoders, there has been limited focus on developing and evaluating explainable neural-based graph generative models specifically designed for signed networks. To address this gap, we propose the Signed Graph Archetypal Autoencoder (SGAAE) framework. SGAAE extracts node-level representations that express node memberships over distinct extreme profiles, referred to as archetypes, within the network. This is achieved by projecting the graph onto a learned polytope, which governs its polarization. The framework employs a recently proposed likelihood for analyzing signed networks based on the Skellam distribution, combined with relational archetypal analysis and GNNs. Our experimental evaluation demonstrates the SGAAEs' capability to successfully infer node memberships over the different underlying latent structures while extracting competing communities formed through the participation of the opposing views in the network. Additionally, we introduce the 2-level network polarization problem and show how SGAAE is able to characterize such a setting. The proposed model achieves high performance in different tasks of signed link prediction across four real-world datasets, outperforming several baseline models.

KAGNNs: Kolmogorov-Arnold Networks meet Graph Learning

In recent years, Graph Neural Networks (GNNs) have become the de facto tool for learning node and graph representations. Most GNNs typically consist of a sequence of neighborhood aggregation (a.k.a., message passing) layers. Within each of these layers, the representation of each node is updated from an aggregation and transformation of its neighbours representations at the previous layer. The upper bound for the expressive power of message passing GNNs was reached through the use of MLPs as a transformation, due to their universal approximation capabilities. However, MLPs suffer from well-known limitations, which recently motivated the introduction of Kolmogorov-Arnold Networks (KANs). KANs rely on the Kolmogorov-Arnold representation theorem, rendering them a promising alternative to MLPs. In this work, we compare the performance of KANs against that of MLPs in graph learning tasks. We perform extensive experiments on node classification, graph classification and graph regression datasets. Our preliminary results indicate that while KANs are on-par with MLPs in classification tasks, they seem to have a clear advantage in the graph regression tasks.

Geometric Self-Supervised Pretraining on 3D Protein Structures using Subgraphs

Protein representation learning aims to learn informative protein embeddings capable of addressing crucial biological questions, such as protein function prediction. Although sequence-based transformer models have shown promising results by leveraging the vast amount of protein sequence data in a self-supervised way, there is still a gap in applying these methods to 3D protein structures. In this work, we propose a pre-training scheme going beyond trivial masking methods leveraging 3D and hierarchical structures of proteins. We propose a novel self-supervised method to pretrain 3D graph neural networks on 3D protein structures, by predicting the distances between local geometric centroids of protein subgraphs and the global geometric centroid of the protein. The motivation for this method is twofold. First, the relative spatial arrangements and geometric relationships among different regions of a protein are crucial for its function. Moreover, proteins are often organized in a hierarchical manner, where smaller substructures, such as secondary structure elements, assemble into larger domains. By considering subgraphs and their relationships to the global protein structure, the model can learn to reason about these hierarchical levels of organization. We experimentally show that our proposed pertaining strategy leads to significant improvements in the performance of 3D GNNs in various protein classification tasks.

Explaining Predictions by Characteristic Rules

Characteristic rules have been advocated for their ability to improve interpretability over discriminative rules within the area of rule learning. However, the former type of rule has not yet been used by techniques for explaining predictions. A novel explanation technique, called CEGA (Characteristic Explanatory General Association rules), is proposed, which employs association rule mining to aggregate multiple explanations generated by any standard local explanation technique into a set of characteristic rules. An empirical investigation is presented, in which CEGA is compared to two state-of-the-art methods, Anchors and GLocalX, for producing local and aggregated explanations in the form of discriminative rules. The results suggest that the proposed approach provides a better trade-off between fidelity and complexity compared to the two state-of-the-art approaches; CEGA and Anchors significantly outperform GLocalX with respect to fidelity, while CEGA and GLocalX significantly outperform Anchors with respect to the number of generated rules. The effect of changing the format of the explanations of CEGA to discriminative rules and using LIME and SHAP as local explanation techniques instead of Anchors are also investigated. The results show that the characteristic explanatory rules still compete favorably with rules in the standard discriminative format. The results also indicate that using CEGA in combination with either SHAP or Anchors consistently leads to a higher fidelity compared to using LIME as the local explanation technique.

Leveraging Discourse Structure for Extractive Meeting Summarization

We introduce an extractive summarization system for meetings that leverages discourse structure to better identify salient information from complex multi-party discussions. Using discourse graphs to represent semantic relations between the contents of utterances in a meeting, we train a GNN-based node classification model to select the most important utterances, which are then combined to create an extractive summary. Experimental results on AMI and ICSI demonstrate that our approach surpasses existing text-based and graph-based extractive summarization systems, as measured by both classification and summarization metrics. Additionally, we conduct ablation studies on discourse structure and relation type to provide insights for future NLP applications leveraging discourse analysis theory.