SegmentAnyTree: A sensor and platform agnostic deep learning model for tree segmentation using laser scanning data

This research advances individual tree crown (ITC) segmentation in lidar data, using a deep learning model applicable to various laser scanning types: airborne (ULS), terrestrial (TLS), and mobile (MLS). It addresses the challenge of transferability across different data characteristics in 3D forest scene analysis. The study evaluates the model's performance based on platform (ULS, MLS) and data density, testing five scenarios with varying input data, including sparse versions, to gauge adaptability and canopy layer efficacy. The model, based on PointGroup architecture, is a 3D CNN with separate heads for semantic and instance segmentation, validated on diverse point cloud datasets. Results show point cloud sparsification enhances performance, aiding sparse data handling and improving detection in dense forests. The model performs well with >50 points per sq. m densities but less so at 10 points per sq. m due to higher omission rates. It outperforms existing methods (e.g., Point2Tree, TLS2trees) in detection, omission, commission rates, and F1 score, setting new benchmarks on LAUTx, Wytham Woods, and TreeLearn datasets. In conclusion, this study shows the feasibility of a sensor-agnostic model for diverse lidar data, surpassing sensor-specific approaches and setting new standards in tree segmentation, particularly in complex forests. This contributes to future ecological modeling and forest management advancements.

Synthetic Data Generation Framework, Dataset, and Efficient Deep Model for Pedestrian Intention Prediction

Pedestrian intention prediction is crucial for autonomous driving. In particular, knowing if pedestrians are going to cross in front of the ego-vehicle is core to performing safe and comfortable maneuvers. Creating accurate and fast models that predict such intentions from sequential images is challenging. A factor contributing to this is the lack of datasets with diverse crossing and non-crossing (C/NC) scenarios. We address this scarceness by introducing a framework, named ARCANE, which allows programmatically generating synthetic datasets consisting of C/NC video clip samples. As an example, we use ARCANE to generate a large and diverse dataset named PedSynth. We will show how PedSynth complements widely used real-world datasets such as JAAD and PIE, so enabling more accurate models for C/NC prediction. Considering the onboard deployment of C/NC prediction models, we also propose a deep model named PedGNN, which is fast and has a very low memory footprint. PedGNN is based on a GNN-GRU architecture that takes a sequence of pedestrian skeletons as input to predict crossing intentions.

Automated forest inventory: analysis of high-density airborne LiDAR point clouds with 3D deep learning

Detailed forest inventories are critical for sustainable and flexible management of forest resources, to conserve various ecosystem services. Modern airborne laser scanners deliver high-density point clouds with great potential for fine-scale forest inventory and analysis, but automatically partitioning those point clouds into meaningful entities like individual trees or tree components remains a challenge. The present study aims to fill this gap and introduces a deep learning framework that is able to perform such a segmentation across diverse forest types and geographic regions. From the segmented data, we then derive relevant biophysical parameters of individual trees as well as stands. The system has been tested on FOR-Instance, a dataset of point clouds that have been acquired in five different countries using surveying drones. The segmentation back-end achieves over 85% F-score for individual trees, respectively over 73% mean IoU across five semantic categories: ground, low vegetation, stems, live branches and dead branches. Building on the segmentation results our pipeline then densely calculates biophysical features of each individual tree (height, crown diameter, crown volume, DBH, and location) and properties per stand (digital terrain model and stand density). Especially crown-related features are in most cases retrieved with high accuracy, whereas the estimates for DBH and location are less reliable, due to the airborne scanning setup.

FOR-instance: a UAV laser scanning benchmark dataset for semantic and instance segmentation of individual trees

The FOR-instance dataset (available at https://doi.org/10.5281/zenodo.8287792) addresses the challenge of accurate individual tree segmentation from laser scanning data, crucial for understanding forest ecosystems and sustainable management. Despite the growing need for detailed tree data, automating segmentation and tracking scientific progress remains difficult. Existing methodologies often overfit small datasets and lack comparability, limiting their applicability. Amid the progress triggered by the emergence of deep learning methodologies, standardized benchmarking assumes paramount importance in these research domains. This data paper introduces a benchmarking dataset for dense airborne laser scanning data, aimed at advancing instance and semantic segmentation techniques and promoting progress in 3D forest scene segmentation. The FOR-instance dataset comprises five curated and ML-ready UAV-based laser scanning data collections from diverse global locations, representing various forest types. The laser scanning data were manually annotated into individual trees (instances) and different semantic classes (e.g. stem, woody branches, live branches, terrain, low vegetation). The dataset is divided into development and test subsets, enabling method advancement and evaluation, with specific guidelines for utilization. It supports instance and semantic segmentation, offering adaptability to deep learning frameworks and diverse segmentation strategies, while the inclusion of diameter at breast height data expands its utility to the measurement of a classic tree variable. In conclusion, the FOR-instance dataset contributes to filling a gap in the 3D forest research, enhancing the development and benchmarking of segmentation algorithms for dense airborne laser scanning data.

Computer-Aided Cytology Diagnosis in Animals: CNN-Based Image Quality Assessment for Accurate Disease Classification

This paper presents a computer-aided cytology diagnosis system designed for animals, focusing on image quality assessment (IQA) using Convolutional Neural Networks (CNNs). The system's building blocks are tailored to seamlessly integrate IQA, ensuring reliable performance in disease classification. We extensively investigate the CNN's ability to handle various image variations and scenarios, analyzing the impact on detecting low-quality input data. Additionally, the network's capacity to differentiate valid cellular samples from those with artifacts is evaluated. Our study employs a ResNet18 network architecture and explores the effects of input sizes and cropping strategies on model performance. The research sheds light on the significance of CNN-based IQA in computer-aided cytology diagnosis for animals, enhancing the accuracy of disease classification.

Using simulation to calibrate real data acquisition in veterinary medicine

This paper explores the innovative use of simulation environments to enhance data acquisition and diagnostics in veterinary medicine, focusing specifically on gait analysis in dogs. The study harnesses the power of Blender and the Blenderproc library to generate synthetic datasets that reflect diverse anatomical, environmental, and behavioral conditions. The generated data, represented in graph form and standardized for optimal analysis, is utilized to train machine learning algorithms for identifying normal and abnormal gaits. Two distinct datasets with varying degrees of camera angle granularity are created to further investigate the influence of camera perspective on model accuracy. Preliminary results suggest that this simulation-based approach holds promise for advancing veterinary diagnostics by enabling more precise data acquisition and more effective machine learning models. By integrating synthetic and real-world patient data, the study lays a robust foundation for improving overall effectiveness and efficiency in veterinary medicine.

Assessing Dataset Quality Through Decision Tree Characteristics in Autoencoder-Processed Spaces

In this paper, we delve into the critical aspect of dataset quality assessment in machine learning classification tasks. Leveraging a variety of nine distinct datasets, each crafted for classification tasks with varying complexity levels, we illustrate the profound impact of dataset quality on model training and performance. We further introduce two additional datasets designed to represent specific data conditions - one maximizing entropy and the other demonstrating high redundancy. Our findings underscore the importance of appropriate feature selection, adequate data volume, and data quality in achieving high-performing machine learning models. To aid researchers and practitioners, we propose a comprehensive framework for dataset quality assessment, which can help evaluate if the dataset at hand is sufficient and of the required quality for specific tasks. This research offers valuable insights into data assessment practices, contributing to the development of more accurate and robust machine learning models.

Using super-resolution for enhancing visual perception and segmentation performance in veterinary cytology

The primary objective of this research was to enhance the quality of semantic segmentation in cytology images by incorporating super-resolution (SR) architectures. An additional contribution was the development of a novel dataset aimed at improving imaging quality in the presence of inaccurate focus. Our experimental results demonstrate that the integration of SR techniques into the segmentation pipeline can lead to a significant improvement of up to 25% in the mean average precision (mAP) segmentation metric. These findings suggest that leveraging SR architectures holds great promise for advancing the state of the art in cytology image analysis.

Segmentation of the veterinary cytological images for fast neoplastic tumors diagnosis

This paper shows the machine learning system which performs instance segmentation of cytological images in veterinary medicine. Eleven cell types were used directly and indirectly in the experiments, including damaged and unrecognized categories. The deep learning models employed in the system achieve a high score of average precision and recall metrics, i.e. 0.94 and 0.8 respectively, for the selected three types of tumors. This variety of label types allowed us to draw a meaningful conclusion that there are relatively few mistakes for tumor cell types. Additionally, the model learned tumor cell features well enough to avoid misclassification mistakes of one tumor type into another. The experiments also revealed that the quality of the results improves with the dataset size (excluding the damaged cells). It is worth noting that all the experiments were done using a custom dedicated dataset provided by the cooperating vet doctors.

Point2Tree(P2T) -- framework for parameter tuning of semantic and instance segmentation used with mobile laser scanning data in coniferous forest

This article introduces Point2Tree, a novel framework that incorporates a three-stage process involving semantic segmentation, instance segmentation, optimization analysis of hyperparemeters importance. It introduces a comprehensive and modular approach to processing laser points clouds in Forestry. We tested it on two independent datasets. The first area was located in an actively managed boreal coniferous dominated forest in V{\aa}ler, Norway, 16 circular plots of 400 square meters were selected to cover a range of forest conditions in terms of species composition and stand density. We trained a model based on Pointnet++ architecture which achieves 0.92 F1-score in semantic segmentation. As a second step in our pipeline we used graph-based approach for instance segmentation which reached F1-score approx. 0.6. The optimization allowed to further boost the performance of the pipeline by approx. 4 \% points.