Improving Health Question Answering with Reliable and Time-Aware Evidence Retrieval

In today's digital world, seeking answers to health questions on the Internet is a common practice. However, existing question answering (QA) systems often rely on using pre-selected and annotated evidence documents, thus making them inadequate for addressing novel questions. Our study focuses on the open-domain QA setting, where the key challenge is to first uncover relevant evidence in large knowledge bases. By utilizing the common retrieve-then-read QA pipeline and PubMed as a trustworthy collection of medical research documents, we answer health questions from three diverse datasets. We modify different retrieval settings to observe their influence on the QA pipeline's performance, including the number of retrieved documents, sentence selection process, the publication year of articles, and their number of citations. Our results reveal that cutting down on the amount of retrieved documents and favoring more recent and highly cited documents can improve the final macro F1 score up to 10%. We discuss the results, highlight interesting examples, and outline challenges for future research, like managing evidence disagreement and crafting user-friendly explanations.

Enterprise Use Cases Combining Knowledge Graphs and Natural Language Processing

Knowledge management is a critical challenge for enterprises in today's digital world, as the volume and complexity of data being generated and collected continue to grow incessantly. Knowledge graphs (KG) emerged as a promising solution to this problem by providing a flexible, scalable, and semantically rich way to organize and make sense of data. This paper builds upon a recent survey of the research literature on combining KGs and Natural Language Processing (NLP). Based on selected application scenarios from enterprise context, we discuss synergies that result from such a combination. We cover various approaches from the three core areas of KG construction, reasoning as well as KG-based NLP tasks. In addition to explaining innovative enterprise use cases, we assess their maturity in terms of practical applicability and conclude with an outlook on emergent application areas for the future.

Comparing Knowledge Sources for Open-Domain Scientific Claim Verification

The increasing rate at which scientific knowledge is discovered and health claims shared online has highlighted the importance of developing efficient fact-checking systems for scientific claims. The usual setting for this task in the literature assumes that the documents containing the evidence for claims are already provided and annotated or contained in a limited corpus. This renders the systems unrealistic for real-world settings where knowledge sources with potentially millions of documents need to be queried to find relevant evidence. In this paper, we perform an array of experiments to test the performance of open-domain claim verification systems. We test the final verdict prediction of systems on four datasets of biomedical and health claims in different settings. While keeping the pipeline's evidence selection and verdict prediction parts constant, document retrieval is performed over three common knowledge sources (PubMed, Wikipedia, Google) and using two different information retrieval techniques. We show that PubMed works better with specialized biomedical claims, while Wikipedia is more suited for everyday health concerns. Likewise, BM25 excels in retrieval precision, while semantic search in recall of relevant evidence. We discuss the results, outline frequent retrieval patterns and challenges, and provide promising future directions.

Diversifying Knowledge Enhancement of Biomedical Language Models using Adapter Modules and Knowledge Graphs

Recent advances in natural language processing (NLP) owe their success to pre-training language models on large amounts of unstructured data. Still, there is an increasing effort to combine the unstructured nature of LMs with structured knowledge and reasoning. Particularly in the rapidly evolving field of biomedical NLP, knowledge-enhanced language models (KELMs) have emerged as promising tools to bridge the gap between large language models and domain-specific knowledge, considering the available biomedical knowledge graphs (KGs) curated by experts over the decades. In this paper, we develop an approach that uses lightweight adapter modules to inject structured biomedical knowledge into pre-trained language models (PLMs). We use two large KGs, the biomedical knowledge system UMLS and the novel biochemical ontology OntoChem, with two prominent biomedical PLMs, PubMedBERT and BioLinkBERT. The approach includes partitioning knowledge graphs into smaller subgraphs, fine-tuning adapter modules for each subgraph, and combining the knowledge in a fusion layer. We test the performance on three downstream tasks: document classification,question answering, and natural language inference. We show that our methodology leads to performance improvements in several instances while keeping requirements in computing power low. Finally, we provide a detailed interpretation of the results and report valuable insights for future work.

HealthFC: A Dataset of Health Claims for Evidence-Based Medical Fact-Checking

Seeking health-related advice on the internet has become a common practice in the digital era. Determining the trustworthiness of medical claims found online and finding appropriate evidence for this information is increasingly challenging. Fact-checking has emerged as an approach to assess the veracity of factual claims using evidence from credible knowledge sources. To help advance the automation of this task, in this paper, we introduce a novel dataset of 750 health-related claims, labeled for veracity by medical experts and backed with evidence from appropriate clinical studies. We provide an analysis of the dataset, highlighting its characteristics and challenges. The dataset can be used for Machine Learning tasks related to automated fact-checking such as evidence retrieval, veracity prediction, and explanation generation. For this purpose, we provide baseline models based on different approaches, examine their performance, and discuss the findings.

Challenges in Domain-Specific Abstractive Summarization and How to Overcome them

Large Language Models work quite well with general-purpose data and many tasks in Natural Language Processing. However, they show several limitations when used for a task such as domain-specific abstractive text summarization. This paper identifies three of those limitations as research problems in the context of abstractive text summarization: 1) Quadratic complexity of transformer-based models with respect to the input text length; 2) Model Hallucination, which is a model's ability to generate factually incorrect text; and 3) Domain Shift, which happens when the distribution of the model's training and test corpus is not the same. Along with a discussion of the open research questions, this paper also provides an assessment of existing state-of-the-art techniques relevant to domain-specific text summarization to address the research gaps.

Scientific Fact-Checking: A Survey of Resources and Approaches

The task of fact-checking deals with assessing the veracity of factual claims based on credible evidence and background knowledge. In particular, scientific fact-checking is the variation of the task concerned with verifying claims rooted in scientific knowledge. This task has received significant attention due to the growing importance of scientific and health discussions on online platforms. Automated scientific fact-checking methods based on NLP can help combat the spread of misinformation, assist researchers in knowledge discovery, and help individuals understand new scientific breakthroughs. In this paper, we present a comprehensive survey of existing research in this emerging field and its related tasks. We provide a task description, discuss the construction process of existing datasets, and analyze proposed models and approaches. Based on our findings, we identify intriguing challenges and outline potential future directions to advance the field.

Sebis at SemEval-2023 Task 7: A Joint System for Natural Language Inference and Evidence Retrieval from Clinical Trial Reports

With the increasing number of clinical trial reports generated every day, it is becoming hard to keep up with novel discoveries that inform evidence-based healthcare recommendations. To help automate this process and assist medical experts, NLP solutions are being developed. This motivated the SemEval-2023 Task 7, where the goal was to develop an NLP system for two tasks: evidence retrieval and natural language inference from clinical trial data. In this paper, we describe our two developed systems. The first one is a pipeline system that models the two tasks separately, while the second one is a joint system that learns the two tasks simultaneously with a shared representation and a multi-task learning approach. The final system combines their outputs in an ensemble system. We formalize the models, present their characteristics and challenges, and provide an analysis of achieved results. Our system ranked 3rd out of 40 participants with a final submission.

Investigating Conversational Search Behavior For Domain Exploration

Conversational search has evolved as a new information retrieval paradigm, marking a shift from traditional search systems towards interactive dialogues with intelligent search agents. This change especially affects exploratory information-seeking contexts, where conversational search systems can guide the discovery of unfamiliar domains. In these scenarios, users find it often difficult to express their information goals due to insufficient background knowledge. Conversational interfaces can provide assistance by eliciting information needs and narrowing down the search space. However, due to the complexity of information-seeking behavior, the design of conversational interfaces for retrieving information remains a great challenge. Although prior work has employed user studies to empirically ground the system design, most existing studies are limited to well-defined search tasks or known domains, thus being less exploratory in nature. Therefore, we conducted a laboratory study to investigate open-ended search behavior for navigation through unknown information landscapes. The study comprised of 26 participants who were restricted in their search to a text chat interface. Based on the collected dialogue transcripts, we applied statistical analyses and process mining techniques to uncover general information-seeking patterns across five different domains. We not only identify core dialogue acts and their interrelations that enable users to discover domain knowledge, but also derive design suggestions for conversational search systems.