You Only Forward Once: Prediction and Rationalization in A Single Forward Pass

Unsupervised rationale extraction aims to extract concise and contiguous text snippets to support model predictions without any annotated rationale. Previous studies have used a two-phase framework known as the Rationalizing Neural Prediction (RNP) framework, which follows a generate-then-predict paradigm. They assumed that the extracted explanation, called rationale, should be sufficient to predict the golden label. However, the assumption above deviates from the original definition and is too strict to perform well. Furthermore, these two-phase models suffer from the interlocking problem and spurious correlations. To solve the above problems, we propose a novel single-phase framework called You Only Forward Once (YOFO), derived from a relaxed version of rationale where rationales aim to support model predictions rather than make predictions. In our framework, A pre-trained language model like BERT is deployed to simultaneously perform prediction and rationalization with less impact from interlocking or spurious correlations. Directly choosing the important tokens in an unsupervised manner is intractable. Instead of directly choosing the important tokens, YOFO gradually removes unimportant tokens during forward propagation. Through experiments on the BeerAdvocate and Hotel Review datasets, we demonstrate that our model is able to extract rationales and make predictions more accurately compared to RNP-based models. We observe an improvement of up to 18.4\% in token-level F1 compared to previous state-of-the-art methods. We also conducted analyses and experiments to explore the extracted rationales and token decay strategies. The results show that YOFO can extract precise and important rationales while removing unimportant tokens in the middle part of the model.

sasdim: self-adaptive noise scaling diffusion model for spatial time series imputation

Spatial time series imputation is critically important to many real applications such as intelligent transportation and air quality monitoring. Although recent transformer and diffusion model based approaches have achieved significant performance gains compared with conventional statistic based methods, spatial time series imputation still remains as a challenging issue due to the complex spatio-temporal dependencies and the noise uncertainty of the spatial time series data. Especially, recent diffusion process based models may introduce random noise to the imputations, and thus cause negative impact on the model performance. To this end, we propose a self-adaptive noise scaling diffusion model named SaSDim to more effectively perform spatial time series imputation. Specially, we propose a new loss function that can scale the noise to the similar intensity, and propose the across spatial-temporal global convolution module to more effectively capture the dynamic spatial-temporal dependencies. Extensive experiments conducted on three real world datasets verify the effectiveness of SaSDim by comparison with current state-of-the-art baselines.

Inter-Instance Similarity Modeling for Contrastive Learning

The existing contrastive learning methods widely adopt one-hot instance discrimination as pretext task for self-supervised learning, which inevitably neglects rich inter-instance similarities among natural images, then leading to potential representation degeneration. In this paper, we propose a novel image mix method, PatchMix, for contrastive learning in Vision Transformer (ViT), to model inter-instance similarities among images. Following the nature of ViT, we randomly mix multiple images from mini-batch in patch level to construct mixed image patch sequences for ViT. Compared to the existing sample mix methods, our PatchMix can flexibly and efficiently mix more than two images and simulate more complicated similarity relations among natural images. In this manner, our contrastive framework can significantly reduce the gap between contrastive objective and ground truth in reality. Experimental results demonstrate that our proposed method significantly outperforms the previous state-of-the-art on both ImageNet-1K and CIFAR datasets, e.g., 3.0% linear accuracy improvement on ImageNet-1K and 8.7% kNN accuracy improvement on CIFAR100. Moreover, our method achieves the leading transfer performance on downstream tasks, object detection and instance segmentation on COCO dataset. The code is available at https://github.com/visresearch/patchmix

Asymmetric Patch Sampling for Contrastive Learning

Asymmetric appearance between positive pair effectively reduces the risk of representation degradation in contrastive learning. However, there are still a mass of appearance similarities between positive pair constructed by the existing methods, which inhibits the further representation improvement. In this paper, we propose a novel asymmetric patch sampling strategy for contrastive learning, to further boost the appearance asymmetry for better representations. Specifically, dual patch sampling strategies are applied to the given image, to obtain asymmetric positive pairs. First, sparse patch sampling is conducted to obtain the first view, which reduces spatial redundancy of image and allows a more asymmetric view. Second, a selective patch sampling is proposed to construct another view with large appearance discrepancy relative to the first one. Due to the inappreciable appearance similarity between positive pair, the trained model is encouraged to capture the similarity on semantics, instead of low-level ones. Experimental results demonstrate that our proposed method significantly outperforms the existing self-supervised methods on both ImageNet-1K and CIFAR dataset, e.g., 2.5% finetune accuracy improvement on CIFAR100. Furthermore, our method achieves state-of-the-art performance on downstream tasks, object detection and instance segmentation on COCO.Additionally, compared to other self-supervised methods, our method is more efficient on both memory and computation during training. The source code is available at https://github.com/visresearch/aps.

Modeling Global Distribution for Federated Learning with Label Distribution Skew

Federated learning achieves joint training of deep models by connecting decentralized data sources, which can significantly mitigate the risk of privacy leakage. However, in a more general case, the distributions of labels among clients are different, called ``label distribution skew''. Directly applying conventional federated learning without consideration of label distribution skew issue significantly hurts the performance of the global model. To this end, we propose a novel federated learning method, named FedMGD, to alleviate the performance degradation caused by the label distribution skew issue. It introduces a global Generative Adversarial Network to model the global data distribution without access to local datasets, so the global model can be trained using the global information of data distribution without privacy leakage. The experimental results demonstrate that our proposed method significantly outperforms the state-of-the-art on several public benchmarks. Code is available at \url{https://github.com/Sheng-T/FedMGD}.

Coded Residual Transform for Generalizable Deep Metric Learning

A fundamental challenge in deep metric learning is the generalization capability of the feature embedding network model since the embedding network learned on training classes need to be evaluated on new test classes. To address this challenge, in this paper, we introduce a new method called coded residual transform (CRT) for deep metric learning to significantly improve its generalization capability. Specifically, we learn a set of diversified prototype features, project the feature map onto each prototype, and then encode its features using their projection residuals weighted by their correlation coefficients with each prototype. The proposed CRT method has the following two unique characteristics. First, it represents and encodes the feature map from a set of complimentary perspectives based on projections onto diversified prototypes. Second, unlike existing transformer-based feature representation approaches which encode the original values of features based on global correlation analysis, the proposed coded residual transform encodes the relative differences between the original features and their projected prototypes. Embedding space density and spectral decay analysis show that this multi-perspective projection onto diversified prototypes and coded residual representation are able to achieve significantly improved generalization capability in metric learning. Finally, to further enhance the generalization performance, we propose to enforce the consistency on their feature similarity matrices between coded residual transforms with different sizes of projection prototypes and embedding dimensions. Our extensive experimental results and ablation studies demonstrate that the proposed CRT method outperform the state-of-the-art deep metric learning methods by large margins and improving upon the current best method by up to 4.28% on the CUB dataset.

TripHLApan: predicting HLA molecules binding peptides based on triple coding matrix and transfer learning

Human leukocyte antigen (HLA) is an important molecule family in the field of human immunity, which recognizes foreign threats and triggers immune responses by presenting peptides to T cells. In recent years, the synthesis of tumor vaccines to induce specific immune responses has become the forefront of cancer treatment. Computationally modeling the binding patterns between peptide and HLA can greatly accelerate the development of tumor vaccines. However, most of the prediction methods performance is very limited and they cannot fully take advantage of the analysis of existing biological knowledge as the basis of modeling. In this paper, we propose TripHLApan, a novel pan-specific prediction model, for HLA molecular peptide binding prediction. TripHLApan exhibits powerful prediction ability by integrating triple coding matrix, BiGRU + Attention models, and transfer learning strategy. The comprehensive evaluations demonstrate the effectiveness of TripHLApan in predicting HLA-I and HLA-II peptide binding in different test environments. The predictive power of HLA-I is further demonstrated in the latest data set. In addition, we show that TripHLApan has strong binding reconstitution ability in the samples of a melanoma patient. In conclusion, TripHLApan is a powerful tool for predicting the binding of HLA-I and HLA-II molecular peptides for the synthesis of tumor vaccines.

Exploring Contextual Relationships for Cervical Abnormal Cell Detection

Cervical abnormal cell detection is a challenging task as the morphological discrepancies between abnormal and normal cells are usually subtle. To determine whether a cervical cell is normal or abnormal, cytopathologists always take surrounding cells as references to identify its abnormality. To mimic these behaviors, we propose to explore contextual relationships to boost the performance of cervical abnormal cell detection. Specifically, both contextual relationships between cells and cell-to-global images are exploited to enhance features of each region of interest (RoI) proposals. Accordingly, two modules, dubbed as RoI-relationship attention module (RRAM) and global RoI attention module (GRAM), are developed and their combination strategies are also investigated. We establish a strong baseline by using Double-Head Faster R-CNN with feature pyramid network (FPN) and integrate our RRAM and GRAM into it to validate the effectiveness of the proposed modules. Experiments conducted on a large cervical cell detection dataset reveal that the introduction of RRAM and GRAM both achieves better average precision (AP) than the baseline methods. Moreover, when cascading RRAM and GRAM, our method outperforms the state-of-the-art (SOTA) methods. Furthermore, we also show the proposed feature enhancing scheme can facilitate both image-level and smear-level classification. The code and trained models are publicly available at https://github.com/CVIU-CSU/CR4CACD.

Taxonomy and evolution predicting using deep learning in images

Molecular and morphological characters, as important parts of biological taxonomy, are contradictory but need to be integrated. Organism's image recognition and bioinformatics are emerging and hot problems nowadays but with a gap between them. In this work, a multi-branching recognition framework mediated by genetic information bridges this barrier, which establishes the link between macro-morphology and micro-molecular information of mushrooms. The novel multi-perspective structure is proposed to fuse the feature images from three branching models, which significantly improves the accuracy of recognition by about 10% and up to more than 90%. Further, genetic information is implemented to the mushroom image recognition task by using genetic distance embeddings as the representation space for predicting image distance and species identification. Semantic overfitting of traditional classification tasks and the granularity of fine-grained image recognition are also discussed in depth for the first time. The generalizability of the model was investigated in fine-grained scenarios using zero-shot learning tasks, which could predict the taxonomic and evolutionary information of unseen samples. We presented the first method to map images to DNA, namely used an encoder mapping image to genetic distances, and then decoded DNA through a pre-trained decoder, where the total test accuracy on 37 species for DNA prediction is 87.45%. This study creates a novel recognition framework by systematically studying the mushroom image recognition problem, bridging the gap between macroscopic biological information and microscopic molecular information, which will provide a new reference for intelligent biometrics in the future.