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Jakub R. Kaczmarzyk

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Open and reusable deep learning for pathology with WSInfer and QuPath

Sep 08, 2023
Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Tahsin Kurc, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joel H. Saltz

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Evaluating histopathology transfer learning with ChampKit

Jun 14, 2022
Jakub R. Kaczmarzyk, Tahsin M. Kurc, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo

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A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment

May 01, 2022
Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin Kurc, Kenneth R. Shroyer, Joel Saltz

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Knowing what you know in brain segmentation using deep neural networks

Dec 18, 2018
Patrick McClure, Nao Rho, John A. Lee, Jakub R. Kaczmarzyk, Charles Zheng, Satrajit S. Ghosh, Dylan Nielson, Adam Thomas, Peter Bandettini, Francisco Pereira

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Distributed Weight Consolidation: A Brain Segmentation Case Study

Oct 12, 2018
Patrick McClure, Charles Y. Zheng, Jakub R. Kaczmarzyk, John Rogers-Lee, Satrajit S. Ghosh, Dylan Nielson, Peter Bandettini, Francisco Pereira

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