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Evaluating histopathology transfer learning with ChampKit


Jun 14, 2022
Jakub R. Kaczmarzyk, Tahsin M. Kurc, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo

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* Submitted to NeurIPS 2022 Track on Datasets and Benchmarks. Source code available at https://github.com/kaczmarj/champkit 

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A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment


May 01, 2022
Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin Kurc, Kenneth R. Shroyer, Joel Saltz

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Knowing what you know in brain segmentation using deep neural networks


Dec 18, 2018
Patrick McClure, Nao Rho, John A. Lee, Jakub R. Kaczmarzyk, Charles Zheng, Satrajit S. Ghosh, Dylan Nielson, Adam Thomas, Peter Bandettini, Francisco Pereira

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* Submitted to NeuroImage 

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Distributed Weight Consolidation: A Brain Segmentation Case Study


Oct 12, 2018
Patrick McClure, Charles Y. Zheng, Jakub R. Kaczmarzyk, John Rogers-Lee, Satrajit S. Ghosh, Dylan Nielson, Peter Bandettini, Francisco Pereira

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* Accepted to NIPS 2018 

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