Meply: A Large-scale Dataset and Baseline Evaluations for Metastatic Perirectal Lymph Node Detection and Segmentation

Accurate segmentation of metastatic lymph nodes in rectal cancer is crucial for the staging and treatment of rectal cancer. However, existing segmentation approaches face challenges due to the absence of pixel-level annotated datasets tailored for lymph nodes around the rectum. Additionally, metastatic lymph nodes are characterized by their relatively small size, irregular shapes, and lower contrast compared to the background, further complicating the segmentation task. To address these challenges, we present the first large-scale perirectal metastatic lymph node CT image dataset called Meply, which encompasses pixel-level annotations of 269 patients diagnosed with rectal cancer. Furthermore, we introduce a novel lymph-node segmentation model named CoSAM. The CoSAM utilizes sequence-based detection to guide the segmentation of metastatic lymph nodes in rectal cancer, contributing to improved localization performance for the segmentation model. It comprises three key components: sequence-based detection module, segmentation module, and collaborative convergence unit. To evaluate the effectiveness of CoSAM, we systematically compare its performance with several popular segmentation methods using the Meply dataset. Our code and dataset will be publicly available at: https://github.com/kanydao/CoSAM.

Refining Latent Homophilic Structures over Heterophilic Graphs for Robust Graph Convolution Networks

Graph convolution networks (GCNs) are extensively utilized in various graph tasks to mine knowledge from spatial data. Our study marks the pioneering attempt to quantitatively investigate the GCN robustness over omnipresent heterophilic graphs for node classification. We uncover that the predominant vulnerability is caused by the structural out-of-distribution (OOD) issue. This finding motivates us to present a novel method that aims to harden GCNs by automatically learning Latent Homophilic Structures over heterophilic graphs. We term such a methodology as LHS. To elaborate, our initial step involves learning a latent structure by employing a novel self-expressive technique based on multi-node interactions. Subsequently, the structure is refined using a pairwisely constrained dual-view contrastive learning approach. We iteratively perform the above procedure, enabling a GCN model to aggregate information in a homophilic way on heterophilic graphs. Armed with such an adaptable structure, we can properly mitigate the structural OOD threats over heterophilic graphs. Experiments on various benchmarks show the effectiveness of the proposed LHS approach for robust GCNs.

CARE: A Large Scale CT Image Dataset and Clinical Applicable Benchmark Model for Rectal Cancer Segmentation

Rectal cancer segmentation of CT image plays a crucial role in timely clinical diagnosis, radiotherapy treatment, and follow-up. Although current segmentation methods have shown promise in delineating cancerous tissues, they still encounter challenges in achieving high segmentation precision. These obstacles arise from the intricate anatomical structures of the rectum and the difficulties in performing differential diagnosis of rectal cancer. Additionally, a major obstacle is the lack of a large-scale, finely annotated CT image dataset for rectal cancer segmentation. To address these issues, this work introduces a novel large scale rectal cancer CT image dataset CARE with pixel-level annotations for both normal and cancerous rectum, which serves as a valuable resource for algorithm research and clinical application development. Moreover, we propose a novel medical cancer lesion segmentation benchmark model named U-SAM. The model is specifically designed to tackle the challenges posed by the intricate anatomical structures of abdominal organs by incorporating prompt information. U-SAM contains three key components: promptable information (e.g., points) to aid in target area localization, a convolution module for capturing low-level lesion details, and skip-connections to preserve and recover spatial information during the encoding-decoding process. To evaluate the effectiveness of U-SAM, we systematically compare its performance with several popular segmentation methods on the CARE dataset. The generalization of the model is further verified on the WORD dataset. Extensive experiments demonstrate that the proposed U-SAM outperforms state-of-the-art methods on these two datasets. These experiments can serve as the baseline for future research and clinical application development.

Fast Community Detection based on Graph Autoencoder Reconstruction

With the rapid development of big data, how to efficiently and accurately discover tight community structures in large-scale networks for knowledge discovery has attracted more and more attention. In this paper, a community detection framework based on Graph AutoEncoder Reconstruction (noted as GAER) is proposed for the first time. GAER is a highly scalable framework which does not require any prior information. We decompose the graph autoencoder-based one-step encoding into the two-stage encoding framework to adapt to the real-world big data system by reducing complexity from the original O(N^2) to O(N). At the same time, based on the advantages of GAER support module plug-and-play configuration and incremental community detection, we further propose a peer awareness based module for real-time large graphs, which can realize the new nodes community detection at a faster speed, and accelerate model inference with the 6.15 times - 14.03 times speed. Finally, we apply the GAER on multiple real-world datasets, including some large-scale networks. The experimental result verified that GAER has achieved the superior performance on almost all networks.

VGAER: graph neural network reconstruction based community detection

Community detection is a fundamental and important issue in network science, but there are only a few community detection algorithms based on graph neural networks, among which unsupervised algorithms are almost blank. By fusing the high-order modularity information with network features, this paper proposes a Variational Graph AutoEncoder Reconstruction based community detection VGAER for the first time, and gives its non-probabilistic version. They do not need any prior information. We have carefully designed corresponding input features, decoder, and downstream tasks based on the community detection task and these designs are concise, natural, and perform well (NMI values under our design are improved by 59.1% - 565.9%). Based on a series of experiments with wide range of datasets and advanced methods, VGAER has achieved superior performance and shows strong competitiveness and potential with a simpler design. Finally, we report the results of algorithm convergence analysis and t-SNE visualization, which clearly depicted the stable performance and powerful network modularity ability of VGAER. Our codes are available at https://github.com/qcydm/VGAER.