Automation of Citation Screening for Systematic Literature Reviews using Neural Networks: A Replicability Study

In the process of Systematic Literature Review, citation screening is estimated to be one of the most time-consuming steps. Multiple approaches to automate it using various machine learning techniques have been proposed. The first research papers that apply deep neural networks to this problem were published in the last two years. In this work, we conduct a replicability study of the first two deep learning papers for citation screening and evaluate their performance on 23 publicly available datasets. While we succeeded in replicating the results of one of the papers, we were unable to replicate the results of the other. We summarise the challenges involved in the replication, including difficulties in obtaining the datasets to match the experimental setup of the original papers and problems with executing the original source code. Motivated by this experience, we subsequently present a simpler model based on averaging word embeddings that outperforms one of the models on 18 out of 23 datasets and is, on average, 72 times faster than the second replicated approach. Finally, we measure the training time and the invariance of the models when exposed to a variety of input features and random initialisations, demonstrating differences in the robustness of these approaches.

PARM: A Paragraph Aggregation Retrieval Model for Dense Document-to-Document Retrieval

Dense passage retrieval (DPR) models show great effectiveness gains in first stage retrieval for the web domain. However in the web domain we are in a setting with large amounts of training data and a query-to-passage or a query-to-document retrieval task. We investigate in this paper dense document-to-document retrieval with limited labelled target data for training, in particular legal case retrieval. In order to use DPR models for document-to-document retrieval, we propose a Paragraph Aggregation Retrieval Model (PARM) which liberates DPR models from their limited input length. PARM retrieves documents on the paragraph-level: for each query paragraph, relevant documents are retrieved based on their paragraphs. Then the relevant results per query paragraph are aggregated into one ranked list for the whole query document. For the aggregation we propose vector-based aggregation with reciprocal rank fusion (VRRF) weighting, which combines the advantages of rank-based aggregation and topical aggregation based on the dense embeddings. Experimental results show that VRRF outperforms rank-based aggregation strategies for dense document-to-document retrieval with PARM. We compare PARM to document-level retrieval and demonstrate higher retrieval effectiveness of PARM for lexical and dense first-stage retrieval on two different legal case retrieval collections. We investigate how to train the dense retrieval model for PARM on limited target data with labels on the paragraph or the document-level. In addition, we analyze the differences of the retrieved results of lexical and dense retrieval with PARM.

Establishing Strong Baselines for TripClick Health Retrieval

We present strong Transformer-based re-ranking and dense retrieval baselines for the recently released TripClick health ad-hoc retrieval collection. We improve the - originally too noisy - training data with a simple negative sampling policy. We achieve large gains over BM25 in the re-ranking task of TripClick, which were not achieved with the original baselines. Furthermore, we study the impact of different domain-specific pre-trained models on TripClick. Finally, we show that dense retrieval outperforms BM25 by considerable margins, even with simple training procedures.

A Time-Optimized Content Creation Workflow for Remote Teaching

We describe our workflow to create an engaging remote learning experience for a university course, while minimizing the post-production time of the educators. We make use of ubiquitous and commonly free services and platforms, so that our workflow is inclusive for all educators and provides polished experiences for students. Our learning materials provide for each lecture: 1) a recorded video, uploaded on YouTube, with exact slide timestamp indices, which enables an enhanced navigation UI; and 2) a high-quality flow-text automated transcript of the narration with proper punctuation and capitalization, improved with a student participation workflow on GitHub. All these results could be created by hand in a time consuming and costly way. However, this would generally exceed the time available for creating course materials. Our main contribution is to automate the transformation and post-production between raw narrated slides and our published materials with a custom toolchain. Furthermore, we describe our complete workflow: from content creation to transformation and distribution. Our students gave us overwhelmingly positive feedback and especially liked our use of ubiquitous platforms. The most used feature was YouTube's chapter UI enabled through our automatically generated timestamps. The majority of students, who started using the transcripts, continued to do so. Every single transcript was corrected by students, with an average word-change of 6%. We conclude with the positive feedback that our enhanced content formats are much appreciated and utilized. Important for educators is how our low overhead production workflow was sustainable throughout a busy semester.

DoSSIER@COLIEE 2021: Leveraging dense retrieval and summarization-based re-ranking for case law retrieval

In this paper, we present our approaches for the case law retrieval and the legal case entailment task in the Competition on Legal Information Extraction/Entailment (COLIEE) 2021. As first stage retrieval methods combined with neural re-ranking methods using contextualized language models like BERT achieved great performance improvements for information retrieval in the web and news domain, we evaluate these methods for the legal domain. A distinct characteristic of legal case retrieval is that the query case and case description in the corpus tend to be long documents and therefore exceed the input length of BERT. We address this challenge by combining lexical and dense retrieval methods on the paragraph-level of the cases for the first stage retrieval. Here we demonstrate that the retrieval on the paragraph-level outperforms the retrieval on the document-level. Furthermore the experiments suggest that dense retrieval methods outperform lexical retrieval. For re-ranking we address the problem of long documents by summarizing the cases and fine-tuning a BERT-based re-ranker with the summaries. Overall, our best results were obtained with a combination of BM25 and dense passage retrieval using domain-specific embeddings.

Linguistically Informed Masking for Representation Learning in the Patent Domain

Domain-specific contextualized language models have demonstrated substantial effectiveness gains for domain-specific downstream tasks, like similarity matching, entity recognition or information retrieval. However successfully applying such models in highly specific language domains requires domain adaptation of the pre-trained models. In this paper we propose the empirically motivated Linguistically Informed Masking (LIM) method to focus domain-adaptative pre-training on the linguistic patterns of patents, which use a highly technical sublanguage. We quantify the relevant differences between patent, scientific and general-purpose language and demonstrate for two different language models (BERT and SciBERT) that domain adaptation with LIM leads to systematically improved representations by evaluating the performance of the domain-adapted representations of patent language on two independent downstream tasks, the IPC classification and similarity matching. We demonstrate the impact of balancing the learning from different information sources during domain adaptation for the patent domain. We make the source code as well as the domain-adaptive pre-trained patent language models publicly available at https://github.com/sophiaalthammer/patent-lim.

Intra-Document Cascading: Learning to Select Passages for Neural Document Ranking

An emerging recipe for achieving state-of-the-art effectiveness in neural document re-ranking involves utilizing large pre-trained language models - e.g., BERT - to evaluate all individual passages in the document and then aggregating the outputs by pooling or additional Transformer layers. A major drawback of this approach is high query latency due to the cost of evaluating every passage in the document with BERT. To make matters worse, this high inference cost and latency varies based on the length of the document, with longer documents requiring more time and computation. To address this challenge, we adopt an intra-document cascading strategy, which prunes passages of a candidate document using a less expensive model, called ESM, before running a scoring model that is more expensive and effective, called ETM. We found it best to train ESM (short for Efficient Student Model) via knowledge distillation from the ETM (short for Effective Teacher Model) e.g., BERT. This pruning allows us to only run the ETM model on a smaller set of passages whose size does not vary by document length. Our experiments on the MS MARCO and TREC Deep Learning Track benchmarks suggest that the proposed Intra-Document Cascaded Ranking Model (IDCM) leads to over 400% lower query latency by providing essentially the same effectiveness as the state-of-the-art BERT-based document ranking models.

Efficiently Teaching an Effective Dense Retriever with Balanced Topic Aware Sampling

A vital step towards the widespread adoption of neural retrieval models is their resource efficiency throughout the training, indexing and query workflows. The neural IR community made great advancements in training effective dual-encoder dense retrieval (DR) models recently. A dense text retrieval model uses a single vector representation per query and passage to score a match, which enables low-latency first stage retrieval with a nearest neighbor search. Increasingly common, training approaches require enormous compute power, as they either conduct negative passage sampling out of a continuously updating refreshing index or require very large batch sizes for in-batch negative sampling. Instead of relying on more compute capability, we introduce an efficient topic-aware query and balanced margin sampling technique, called TAS-Balanced. We cluster queries once before training and sample queries out of a cluster per batch. We train our lightweight 6-layer DR model with a novel dual-teacher supervision that combines pairwise and in-batch negative teachers. Our method is trainable on a single consumer-grade GPU in under 48 hours (as opposed to a common configuration of 8x V100s). We show that our TAS-Balanced training method achieves state-of-the-art low-latency (64ms per query) results on two TREC Deep Learning Track query sets. Evaluated on NDCG@10, we outperform BM25 by 44%, a plainly trained DR by 19%, docT5query by 11%, and the previous best DR model by 5%. Additionally, TAS-Balanced produces the first dense retriever that outperforms every other method on recall at any cutoff on TREC-DL and allows more resource intensive re-ranking models to operate on fewer passages to improve results further.

Cross-domain Retrieval in the Legal and Patent Domains: a Reproducibility Study

Domain specific search has always been a challenging information retrieval task due to several challenges such as the domain specific language, the unique task setting, as well as the lack of accessible queries and corresponding relevance judgements. In the last years, pretrained language models, such as BERT, revolutionized web and news search. Naturally, the community aims to adapt these advancements to cross-domain transfer of retrieval models for domain specific search. In the context of legal document retrieval, Shao et al. propose the BERT-PLI framework by modeling the Paragraph Level Interactions with the language model BERT. In this paper we reproduce the original experiments, we clarify pre-processing steps, add missing scripts for framework steps and investigate different evaluation approaches, however we are not able to reproduce the evaluation results. Contrary to the original paper, we demonstrate that the domain specific paragraph-level modelling does not appear to help the performance of the BERT-PLI model compared to paragraph-level modelling with the original BERT. In addition to our legal search reproducibility study, we investigate BERT-PLI for document retrieval in the patent domain. We find that the BERT-PLI model does not yet achieve performance improvements for patent document retrieval compared to the BM25 baseline. Furthermore, we evaluate the BERT-PLI model for cross-domain retrieval between the legal and patent domain on individual components, both on a paragraph and document-level. We find that the transfer of the BERT-PLI model on the paragraph-level leads to comparable results between both domains as well as first promising results for the cross-domain transfer on the document-level. For reproducibility and transparency as well as to benefit the community we make our source code and the trained models publicly available.

Mitigating the Position Bias of Transformer Models in Passage Re-Ranking

Supervised machine learning models and their evaluation strongly depends on the quality of the underlying dataset. When we search for a relevant piece of information it may appear anywhere in a given passage. However, we observe a bias in the position of the correct answer in the text in two popular Question Answering datasets used for passage re-ranking. The excessive favoring of earlier positions inside passages is an unwanted artefact. This leads to three common Transformer-based re-ranking models to ignore relevant parts in unseen passages. More concerningly, as the evaluation set is taken from the same biased distribution, the models overfitting to that bias overestimate their true effectiveness. In this work we analyze position bias on datasets, the contextualized representations, and their effect on retrieval results. We propose a debiasing method for retrieval datasets. Our results show that a model trained on a position-biased dataset exhibits a significant decrease in re-ranking effectiveness when evaluated on a debiased dataset. We demonstrate that by mitigating the position bias, Transformer-based re-ranking models are equally effective on a biased and debiased dataset, as well as more effective in a transfer-learning setting between two differently biased datasets.