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Atlas-powered deep learning (ADL) -- application to diffusion weighted MRI


May 05, 2022
Davood Karimi, Ali Gholipour


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Deep Learning Framework for Real-time Fetal Brain Segmentation in MRI


May 02, 2022
Razieh Faghihpirayesh, Davood Karimi, Deniz Erdogmus, Ali Gholipour

* 11 pages, 5 figures, submitted to Medical Image Computing and Computer Assisted Intervention (MICCAI) Conference 

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Fetal Brain Tissue Annotation and Segmentation Challenge Results


Apr 20, 2022
Kelly Payette, Hongwei Li, Priscille de Dumast, Roxane Licandro, Hui Ji, Md Mahfuzur Rahman Siddiquee, Daguang Xu, Andriy Myronenko, Hao Liu, Yuchen Pei, Lisheng Wang, Ying Peng, Juanying Xie, Huiquan Zhang, Guiming Dong, Hao Fu, Guotai Wang, ZunHyan Rieu, Donghyeon Kim, Hyun Gi Kim, Davood Karimi, Ali Gholipour, Helena R. Torres, Bruno Oliveira, João L. Vilaça, Yang Lin, Netanell Avisdris, Ori Ben-Zvi, Dafna Ben Bashat, Lucas Fidon, Michael Aertsen, Tom Vercauteren, Daniel Sobotka, Georg Langs, Mireia Alenyà, Maria Inmaculada Villanueva, Oscar Camara, Bella Specktor Fadida, Leo Joskowicz, Liao Weibin, Lv Yi, Li Xuesong, Moona Mazher, Abdul Qayyum, Domenec Puig, Hamza Kebiri, Zelin Zhang, Xinyi Xu, Dan Wu, KuanLun Liao, YiXuan Wu, JinTai Chen, Yunzhi Xu, Li Zhao, Lana Vasung, Bjoern Menze, Meritxell Bach Cuadra, Andras Jakab

* Results from FeTA Challenge 2021, held at MICCAI; Manuscript submitted 

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Learning to segment fetal brain tissue from noisy annotations


Mar 25, 2022
Davood Karimi, Caitlin K. Rollins, Clemente Velasco-Annis, Abdelhakim Ouaalam, Ali Gholipour


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Diffusion Tensor Estimation with Transformer Neural Networks


Jan 14, 2022
Davood Karimi, Ali Gholipour


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Calibrated Diffusion Tensor Estimation


Nov 21, 2021
Davood Karimi, Simon K. Warfield, Ali Gholipour


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Convolution-Free Medical Image Segmentation using Transformers


Feb 26, 2021
Davood Karimi, Serge Vasylechko, Ali Gholipour


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A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging


Jun 19, 2020
Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour


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Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks


May 30, 2020
Davood Karimi, Simon K. Warfield, Ali Gholipour


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A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI


Apr 27, 2020
Haoran Dou, Davood Karimi, Caitlin K. Rollins, Cynthia M. Ortinau, Lana Vasung, Clemente Velasco-Annis, Abdelhakim Ouaalam, Xin Yang, Dong Ni, Ali Gholipour

* 10 pages, 6 figures, 3 tables 

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