DeepVerse PTE. LTD., Singapore
Abstract:The high cost and data scarcity in scientific exploration have motivated the use of large language models (LLMs) as knowledge-driven components in Bayesian optimization (BO). However, existing approaches typically embed LLMs directly into the sampling or surrogate modeling pipeline, without fully leveraging their significantly lower evaluation cost compared to real-world experiments. To address this limitation, we propose LLM-Accelerated Bayesian Optimization (LABO), a framework that combines LLM predictions with experimental observations within a single BO loop. LABO employs a gating criterion to dynamically balance the reliance on LLM predictions versus actual experiments. By leveraging inexpensive LLM evaluations to broadly explore the search space and reserving costly real experiments only for regions with high uncertainty, LABO achieves more sample-efficient optimization. We provide a theoretical analysis with a cumulative regret bound that formalizes this efficiency gain. Empirical results across diverse scientific tasks demonstrate that LABO consistently outperforms existing methods under identical experimental budgets. Our results suggest that LABO offers a practical and theoretically grounded approach for integrating LLMs into scientific discovery workflows.
Abstract:Large language models (LLMs) hold great promise for specialized scientific domains such as materials science, yet adapting them efficiently and accurately to domain-specific knowledge remains challenging due to limited data and high knowledge density. We propose a two-stage framework that combines structured model compression with a scientific fine-tuning regimen to address this challenge. In the compression stage, we decompose the LLM's weight matrices into local low-rank "rank blocks" and arrange these blocks in a Penrose-like non-periodic tiling pattern. Each block is then compacted via spectral transformations (e.g., discrete cosine or Fourier transforms), and a Kullback-Leibler (KL) divergence-based alignment loss preserves the distributional similarity between the compressed model's representations and those of the original full model. In the adaptation stage, the compressed model is further tuned using a human-like scientific reading protocol: it processes technical materials science documents section by section, engaging in a structured question-and-answer routine for each section. This section-wise Q&A fine-tuning strategy extracts explicit reasoning traces and gradually injects domain knowledge, while minimizing catastrophic forgetting of the model's general language capabilities. By balancing efficient compression with targeted adaptation, our two-stage approach enables precise specialization of LLMs to high-value domains under data-scarce conditions. We present this principled yet exploratory pipeline and outline its potential for advancing materials science knowledge integration, laying the groundwork for comprehensive empirical evaluation in future work.