OpenAL: An Efficient Deep Active Learning Framework for Open-Set Pathology Image Classification

Active learning (AL) is an effective approach to select the most informative samples to label so as to reduce the annotation cost. Existing AL methods typically work under the closed-set assumption, i.e., all classes existing in the unlabeled sample pool need to be classified by the target model. However, in some practical clinical tasks, the unlabeled pool may contain not only the target classes that need to be fine-grainedly classified, but also non-target classes that are irrelevant to the clinical tasks. Existing AL methods cannot work well in this scenario because they tend to select a large number of non-target samples. In this paper, we formulate this scenario as an open-set AL problem and propose an efficient framework, OpenAL, to address the challenge of querying samples from an unlabeled pool with both target class and non-target class samples. Experiments on fine-grained classification of pathology images show that OpenAL can significantly improve the query quality of target class samples and achieve higher performance than current state-of-the-art AL methods. Code is available at https://github.com/miccaiif/OpenAL.

Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need

Weakly supervised whole slide image classification is usually formulated as a multiple instance learning (MIL) problem, where each slide is treated as a bag, and the patches cut out of it are treated as instances. Existing methods either train an instance classifier through pseudo-labeling or aggregate instance features into a bag feature through attention mechanisms and then train a bag classifier, where the attention scores can be used for instance-level classification. However, the pseudo instance labels constructed by the former usually contain a lot of noise, and the attention scores constructed by the latter are not accurate enough, both of which affect their performance. In this paper, we propose an instance-level MIL framework based on contrastive learning and prototype learning to effectively accomplish both instance classification and bag classification tasks. To this end, we propose an instance-level weakly supervised contrastive learning algorithm for the first time under the MIL setting to effectively learn instance feature representation. We also propose an accurate pseudo label generation method through prototype learning. We then develop a joint training strategy for weakly supervised contrastive learning, prototype learning, and instance classifier training. Extensive experiments and visualizations on four datasets demonstrate the powerful performance of our method. Codes will be available.