Visual Analytics of Multivariate Networks with Representation Learning and Composite Variable Construction

Multivariate networks are commonly found in real-world data-driven applications. Uncovering and understanding the relations of interest in multivariate networks is not a trivial task. This paper presents a visual analytics workflow for studying multivariate networks to extract associations between different structural and semantic characteristics of the networks (e.g., what are the combinations of attributes largely relating to the density of a social network?). The workflow consists of a neural-network-based learning phase to classify the data based on the chosen input and output attributes, a dimensionality reduction and optimization phase to produce a simplified set of results for examination, and finally an interpreting phase conducted by the user through an interactive visualization interface. A key part of our design is a composite variable construction step that remodels nonlinear features obtained by neural networks into linear features that are intuitive to interpret. We demonstrate the capabilities of this workflow with multiple case studies on networks derived from social media usage and also evaluate the workflow through an expert interview.

Visual Analytics of Neuron Vulnerability to Adversarial Attacks on Convolutional Neural Networks

Adversarial attacks on a convolutional neural network (CNN) -- injecting human-imperceptible perturbations into an input image -- could fool a high-performance CNN into making incorrect predictions. The success of adversarial attacks raises serious concerns about the robustness of CNNs, and prevents them from being used in safety-critical applications, such as medical diagnosis and autonomous driving. Our work introduces a visual analytics approach to understanding adversarial attacks by answering two questions: (1) which neurons are more vulnerable to attacks and (2) which image features do these vulnerable neurons capture during the prediction? For the first question, we introduce multiple perturbation-based measures to break down the attacking magnitude into individual CNN neurons and rank the neurons by their vulnerability levels. For the second, we identify image features (e.g., cat ears) that highly stimulate a user-selected neuron to augment and validate the neuron's responsibility. Furthermore, we support an interactive exploration of a large number of neurons by aiding with hierarchical clustering based on the neurons' roles in the prediction. To this end, a visual analytics system is designed to incorporate visual reasoning for interpreting adversarial attacks. We validate the effectiveness of our system through multiple case studies as well as feedback from domain experts.

Feature Learning for Dimensionality Reduction toward Maximal Extraction of Hidden Patterns

Dimensionality reduction (DR) plays a vital role in the visual analysis of high-dimensional data. One main aim of DR is to reveal hidden patterns that lie on intrinsic low-dimensional manifolds. However, DR often overlooks important patterns when the manifolds are strongly distorted or hidden by certain influential data attributes. This paper presents a feature learning framework, FEALM, designed to generate an optimized set of data projections for nonlinear DR in order to capture important patterns in the hidden manifolds. These projections produce maximally different nearest-neighbor graphs so that resultant DR outcomes are significantly different. To achieve such a capability, we design an optimization algorithm as well as introduce a new graph dissimilarity measure, called neighbor-shape dissimilarity. Additionally, we develop interactive visualizations to assist comparison of obtained DR results and interpretation of each DR result. We demonstrate FEALM's effectiveness through experiments using synthetic datasets and multiple case studies on real-world datasets.

A Machine-Learning-Aided Visual Analysis Workflow for Investigating Air Pollution Data

Analyzing air pollution data is challenging as there are various analysis focuses from different aspects: feature (what), space (where), and time (when). As in most geospatial analysis problems, besides high-dimensional features, the temporal and spatial dependencies of air pollution induce the complexity of performing analysis. Machine learning methods, such as dimensionality reduction, can extract and summarize important information of the data to lift the burden of understanding such a complicated environment. In this paper, we present a methodology that utilizes multiple machine learning methods to uniformly explore these aspects. With this methodology, we develop a visual analytic system that supports a flexible analysis workflow, allowing domain experts to freely explore different aspects based on their analysis needs. We demonstrate the capability of our system and analysis workflow supporting a variety of analysis tasks with multiple use cases.

Interactive Dimensionality Reduction for Comparative Analysis

Finding the similarities and differences between two or more groups of datasets is a fundamental analysis task. For high-dimensional data, dimensionality reduction (DR) methods are often used to find the characteristics of each group. However, existing DR methods provide limited capability and flexibility for such comparative analysis as each method is designed only for a narrow analysis target, such as identifying factors that most differentiate groups. In this work, we introduce an interactive DR framework where we integrate our new DR method, called ULCA (unified linear comparative analysis), with an interactive visual interface. ULCA unifies two DR schemes, discriminant analysis and contrastive learning, to support various comparative analysis tasks. To provide flexibility for comparative analysis, we develop an optimization algorithm that enables analysts to interactively refine ULCA results. Additionally, we provide an interactive visualization interface to examine ULCA results with a rich set of analysis libraries. We evaluate ULCA and the optimization algorithm to show their efficiency as well as present multiple case studies using real-world datasets to demonstrate the usefulness of our framework.

A Visual Analytics Framework for Contrastive Network Analysis

A common network analysis task is comparison of two networks to identify unique characteristics in one network with respect to the other. For example, when comparing protein interaction networks derived from normal and cancer tissues, one essential task is to discover protein-protein interactions unique to cancer tissues. However, this task is challenging when the networks contain complex structural (and semantic) relations. To address this problem, we design ContraNA, a visual analytics framework leveraging both the power of machine learning for uncovering unique characteristics in networks and also the effectiveness of visualization for understanding such uniqueness. The basis of ContraNA is cNRL, which integrates two machine learning schemes, network representation learning (NRL) and contrastive learning (CL), to generate a low-dimensional embedding that reveals the uniqueness of one network when compared to another. ContraNA provides an interactive visualization interface to help analyze the uniqueness by relating embedding results and network structures as well as explaining the learned features by cNRL. We demonstrate the usefulness of ContraNA with two case studies using real-world datasets. We also evaluate through a controlled user study with 12 participants on network comparison tasks. The results show that participants were able to both effectively identify unique characteristics from complex networks and interpret the results obtained from cNRL.

A Visual Analytics Framework for Reviewing Multivariate Time-Series Data with Dimensionality Reduction

Data-driven problem solving in many real-world applications involves analysis of time-dependent multivariate data, for which dimensionality reduction (DR) methods are often used to uncover the intrinsic structure and features of the data. However, DR is usually applied to a subset of data that is either single-time-point multivariate or univariate time-series, resulting in the need to manually examine and correlate the DR results out of different data subsets. When the number of dimensions is large either in terms of the number of time points or attributes, this manual task becomes too tedious and infeasible. In this paper, we present MulTiDR, a new DR framework that enables processing of time-dependent multivariate data as a whole to provide a comprehensive overview of the data. With the framework, we employ DR in two steps. When treating the instances, time points, and attributes of the data as a 3D array, the first DR step reduces the three axes of the array to two, and the second DR step visualizes the data in a lower-dimensional space. In addition, by coupling with a contrastive learning method and interactive visualizations, our framework enhances analysts' ability to interpret DR results. We demonstrate the effectiveness of our framework with four case studies using real-world datasets.

Contrastive Multiple Correspondence Analysis (cMCA): Applying the Contrastive Learning Method to Identify Political Subgroups

Ideal point estimation and dimensionality reduction have long been utilized to simplify and cluster complex, high-dimensional political data (e.g., roll-call votes and surveys) for use in analysis and visualization. These methods often work by finding the directions or principal components (PCs) on which either the data varies the most or respondents make the fewest decision errors. However, these PCs, which usually reflect the left-right political spectrum, are sometimes uninformative in explaining significant differences in the distribution of the data (e.g., how to categorize a set of highly-moderate voters). To tackle this issue, we adopt an emerging analysis approach, called contrastive learning. Contrastive learning-e.g., contrastive principal component analysis (cPCA)-works by first splitting the data by predefined groups, and then deriving PCs on which the target group varies the most but the background group varies the least. As a result, cPCA can often find `hidden' patterns, such as subgroups within the target group, which PCA cannot reveal when some variables are the dominant source of variations across the groups. We contribute to the field of contrastive learning by extending it to multiple correspondence analysis (MCA) to enable an analysis of data often encountered by social scientists---namely binary, ordinal, and nominal variables. We demonstrate the utility of contrastive MCA (cMCA) by analyzing three different surveys: The 2015 Cooperative Congressional Election Study, 2012 UTokyo-Asahi Elite Survey, and 2018 European Social Survey. Our results suggest that, first, for the cases when ordinary MCA depicts differences between groups, cMCA can further identify characteristics that divide the target group; second, for the cases when MCA does not show clear differences, cMCA can successfully identify meaningful directions and subgroups, which traditional methods overlook.

Interpretable Contrastive Learning for Networks

Contrastive learning (CL) is an emerging analysis approach that aims to discover unique patterns in one dataset relative to another. By applying this approach to network analysis, we can reveal unique characteristics in one network by contrasting with another. For example, with networks of protein interactions obtained from normal and cancer tissues, we can discover unique types of interactions in cancer tissues. However, existing CL methods cannot be directly applied to networks. To address this issue, we introduce a novel approach called contrastive network representation learning (cNRL). This approach embeds network nodes into a low-dimensional space that reveals the uniqueness of one network compared to another. Within this approach, we also design a method, named i-cNRL, that offers interpretability in the learned results, allowing for understanding which specific patterns are found in one network but not the other. We demonstrate the capability of i-cNRL with multiple network models and real-world datasets. Furthermore, we provide quantitative and qualitative comparisons across i-cNRL and other potential cNRL algorithm designs.

A Visual Analytics System for Multi-model Comparison on Clinical Data Predictions

There is a growing trend of applying machine learning methods to medical datasets in order to predict patients' future status. Although some of these methods achieve high performance, challenges still exist in comparing and evaluating different models through their interpretable information. Such analytics can help clinicians improve evidence-based medical decision making. In this work, we develop a visual analytics system that compares multiple models' prediction criteria and evaluates their consistency. With our system, users can generate knowledge on different models' inner criteria and how confidently we can rely on each model's prediction for a certain patient. Through a case study of a publicly available clinical dataset, we demonstrate the effectiveness of our visual analytics system to assist clinicians and researchers in comparing and quantitatively evaluating different machine learning methods.